Browse Element(s) Details


Os.5188.2.S1_x_at

Description gb:AK068722.1
DB_XREF= gi:32978739
TID=Os.5188.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-306-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013165B12, full insert sequence.
FL= gb:AK068722.1 gb:AK104226.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2341011/11Rubredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23380OsAffx.29315.1.S1_at4/118+13999436..14002862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23380OsAffx.3810.1.S1_at3/118+13999436..14002862retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23390Os.23638.1.A1_x_at1/118+14008162..14009966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23400OsAffx.22947.1.S1_x_at1/118+14010252..14014703retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23410Os.5188.2.S1_x_at11/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23410Os.5188.2.S1_s_at4/118+14025037..14026018Rubredoxin family protein, expressed
LOC_Os08g23420OsAffx.5903.1.S1_at10/118+14031879..14033448hypothetical protein
LOC_Os08g23430Os.15099.1.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed
LOC_Os08g23430Os.15099.2.S1_at11/118+14034936..14046046glycoside hydrolase starch-binding domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5188.2.S1_x_at--952--3911Chr08:14025580..14025604 (25 bp)
CGGCGGCTCCGGAGACCGAACAAGC
LOC_Os08g23410
Os.5188.2.S1_x_at--754--6991Chr08:14025453..14025477 (25 bp)
GTACGAGTGCCGGTCGTGCGGGTAC
LOC_Os08g23410
Os.5188.2.S1_x_at--284--8851Chr08:14025437..14025461 (25 bp)
TGCGGGTACCGGTACGACCAGGCCG
LOC_Os08g23410
Os.5188.2.S1_x_at--203--5031Chr08:14025327..14025351 (25 bp)
GCAGTCCTTCTTCGAGAGCAAGAGC
LOC_Os08g23410
Os.5188.2.S1_x_at--535--3231Chr08:14025309..14025333 (25 bp)
CAAGAGCGTCGAGATCGCCGGGTTC
LOC_Os08g23410
Os.5188.2.S1_x_at--257--4071Chr08:14025300..14025324 (25 bp)
CGAGATCGCCGGGTTCGCGCAGAAC
LOC_Os08g23410
Os.5188.2.S1_x_at--385--6711Chr08:14025288..14025312 (25 bp)
GTTCGCGCAGAACCAGCAGTTCGGC
LOC_Os08g23410
Os.5188.2.S1_x_at--202--5851Chr08:14025239..14025263 (25 bp)
GACCAGAAAGCGCTGCTCATCTACG
LOC_Os08g23410
Os.5188.2.S1_x_at--301--4851Chr08:14025178..14025202 (25 bp)
GCTACTTCCTCCAATGAACCAGTCA
LOC_Os08g23410
Os.5188.2.S1_x_at--920--9531Chr08:14025124..14025148 (25 bp)
TCTACCTCTACTGTGCCTGTTTCTA
LOC_Os08g23410
Os.5188.2.S1_x_at--97--1971Chr08:14025115..14025139 (25 bp)
ACTGTGCCTGTTTCTACTAATTAAG
LOC_Os08g23410
Target Sequence 
CGGCGGCTCCGGAGACCGAACAAGCGGAGGCGGTGGCGTCGCCGGAGTTGGAGTTGGAGCTGGAGGAGGGGCCGAANGTG
GACCCGCGGCGGCTGGAGGAGAAGTTCGCGGTGCTGAACACGGGGGTGTACGAGTGCCGGTCGTGCGGGTACCGGTACGA
CCAGGCCGCCGGTGACCCGTCGTACCCGGTGCCGCCGGGGCTGCCGTTCGAGCAGCTCCCCGACGACTGGCGGTGCCCGA
CGTGCGGCGCGGCGCAGTCCTTCTTCGAGAGCAAGAGCGTCGAGATCGCCGGGTTCGCGCAGAACCAGCAGTTCGGCCTC
GGCGGCAACTCCCTCACCGGCGACCAGAAAGCGCTGCTCATCTACGGCAGCCTCCTCGTCGGCTTCCTCTTCTTCCTCTC
CGGCTACTTCCTCCAATGAACCAGTCACCCCCTCTTCCTAATTCTCTACCTCTACCTCTACCTCTACTGTGCCTGTTTCT
ACTAATTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5188.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis