Browse Element(s) Details


Os.51881.1.S1_at

Description gb:AK064170.1
DB_XREF= gi:32974188
TID=Os.51881.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A03, full insert sequence.
FL= gb:AK064170.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1000010/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g09960OsAffx.30905.4.S1_at10/1111+5332325..5335972hypothetical protein
LOC_Os11g09960OsAffx.30905.2.S1_at3/1111+5332325..5335972hypothetical protein
LOC_Os11g09960Os.17219.2.S1_x_at2/1111+5332325..5335972hypothetical protein
LOC_Os11g09970OsAffx.30905.1.S1_at11/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.17219.2.S1_x_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970Os.24499.1.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09970OsAffx.30905.2.S1_at1/1111+5337930..5341081F-box domain containing protein, expressed
LOC_Os11g09980OsAffx.26161.1.S1_at10/1111+5345729..5347368hypothetical protein
LOC_Os11g09990Os.22922.1.S1_at11/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g09990OsAffx.30913.1.S1_at1/1111+5353178..5354840mTERF family protein, expressed
LOC_Os11g10000Os.51881.1.S1_at10/1111+5358656..5360424mTERF family protein, expressed
LOC_Os11g10010OsAffx.18774.1.S1_at11/1111+5362883..5363562hypothetical protein
LOC_Os11g10020OsAffx.7056.1.S1_at11/1111+5364123..5365737hypothetical protein
LOC_Os11g10030OsAffx.18775.1.S1_at11/1111+5366696..5366920hypothetical protein
LOC_Os11g10040Os.24789.1.A1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.1.S1_at11/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10040Os.55783.2.S1_x_at10/1111+5368102..5370997mTERF family protein, expressed
LOC_Os11g10050Os.11635.1.S1_at11/1111+5373891..5379346G-protein alpha subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51881.1.S1_at--640--1171Chr11:5359220..5359244 (25 bp)
AGTAAGCCTGTTTTGTTCGCGTGCA
LOC_Os11g10000
Os.51881.1.S1_at--1095--2491Chr11:5359113..5359137 (25 bp)
AACATATGCCATACTGCGGGAGAAG
LOC_Os11g10000
Os.51881.1.S1_at--625--4131Chr11:5359038..5359062 (25 bp)
CGCTGATGCCTATGCCACAATTTGT
LOC_Os11g10000
Os.51881.1.S1_at--617--3251Chr11:5358989..5359013 (25 bp)
CAACCTTGACATCCTCAGACTGAGA
LOC_Os11g10000
Os.51881.1.S1_at--747--8551Chr11:5358961..5358985 (25 bp)
TGGAGTTCATTTCGGCAAGGTGCCT
LOC_Os11g10000
Os.51881.1.S1_at--202--2891Chr11:5358945..5358969 (25 bp)
AAGGTGCCTGCTGAAGTCCAACTAT
LOC_Os11g10000
Os.51881.1.S1_at--558--251Chr11:5358874..5358898 (25 bp)
ATATCTGACCTAACACTTCATGCTC
LOC_Os11g10000
Os.51881.1.S1_at--818--8591NONE
TGGTCCTATATTTTTCCATACCCAT
NONE
Os.51881.1.S1_at--561--51Chr11:5358751..5358775 (25 bp)
ATTGTTTTAATCTTGCTGCCCTAGT
LOC_Os11g10000
Os.51881.1.S1_at--467--7291Chr11:5358728..5358752 (25 bp)
GTGCCCTTATAGCTTTACTGTCTCA
LOC_Os11g10000
Os.51881.1.S1_at--747--771Chr11:5358704..5358728 (25 bp)
ATGTGATGGCTCGTTGCTTCAACAG
LOC_Os11g10000
Target Sequence 
AGTAAGCCTGTTTTGTTCGCGTGCAGCCTGGAGAAGCGGTTGATGCCGAGGCATTATATTGTAGAAGTCCTTTTGGCTAA
GGGATTGATAAAAAATGCTGGCTTTTTAACATATGCCATACTGCGGGAGAAGGATTTCGTAGCAAGGTACATTGATCAAC
ACAAGAATGCTGTTCCTGGGCTCGCTGATGCCTATGCCACAATTTGTTCTGGGAAAGTGCCTCCTGAGCTGCAACCTTGA
CATCCTCAGACTGAGATGTTGGAGTTCATTTCGGCAAGGTGCCTGCTGAAGTCCAACTATATCATTTTTGGATGGATATA
TTGGAGGTTAATTATCTTTCAGGCCTATATCTGACCTAACACTTCATGCTCTGAGGATCAGTACTTGATGTTCATTCATG
GTCCTATATTTTTCCATACCCATTGATTTCTGCTGTAGTTTAAGTTATTGCTATTTATGCAGCAACTGGATTGTTTTAAT
CTTGCTGCCCTAGTGCCCTTATAGCTTTACTGTCTCATGTGATGGCTCGTTGCTTCAACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis