Browse Element(s) Details


Os.51892.1.S1_at

Description gb:AK064204.1
DB_XREF= gi:32974222
TID=Os.51892.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E03, full insert sequence.
FL= gb:AK064204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4448011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44410NANA2+26890174..26893383retrotransposon protein, putative, unclassified
LOC_Os02g44420OsAffx.19826.2.S1_at5/112+26894170..26894981hypothetical protein
LOC_Os02g44430Os.55650.1.A1_at7/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44430OsAffx.21756.5.A1_x_at5/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44430Os.7307.3.S1_x_at2/112+26896819..26898680transposon protein, putative, unclassified
LOC_Os02g44440NANA2+26901457..26903865retrotransposon protein, putative, unclassified
LOC_Os02g44450NANA2+26907242..26908504hypothetical protein
LOC_Os02g44460NANA2+26911409..26912635retrotransposon protein, putative, unclassified
LOC_Os02g44470Os.52855.1.S1_at11/112+26914037..26916159Actin-depolymerizing factor, putative, expressed
LOC_Os02g44480Os.51892.1.S1_at11/112+26916643..26918340pentatricopeptide, putative
LOC_Os02g44490Os.52714.1.S1_at10/112+26918848..26921304C2 domain containing protein, expressed
LOC_Os02g44500Os.4833.1.S1_at11/112+26923889..26926534phospholipid hydroperoxide glutathione peroxidase, putative, expressed
LOC_Os02g44510Os.5900.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed
LOC_Os02g44510OsAffx.12492.1.S1_x_at10/112+26937222..26945553UDP-glucose:glycoprotein glucosyltransferase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51892.1.S1_at--575--1071Chr02:26917099..26917123 (25 bp)
AGGGAAGCCGAATACTGTGACCATC
LOC_Os02g44480
Os.51892.1.S1_at--8--551Chr02:26917077..26917101 (25 bp)
ATCGCCACTTTGCTGTATGCATGCA
LOC_Os02g44480
Os.51892.1.S1_at--464--611Chr02:26917008..26917032 (25 bp)
ATGCGCAACGTCCATGGTTTGATGC
LOC_Os02g44480
Os.51892.1.S1_at--17--2311Chr02:26916982..26917006 (25 bp)
AAATGGCGAGCACTACTCGTGCCTG
LOC_Os02g44480
Os.51892.1.S1_at--418--1991Chr02:26916968..26916992 (25 bp)
ACTCGTGCCTGGTTGACATGCTTGG
LOC_Os02g44480
Os.51892.1.S1_at--751--911Chr02:26916923..26916947 (25 bp)
AGGCTCATCGTCTCATCCAAGATAT
LOC_Os02g44480
Os.51892.1.S1_at--807--2811Chr02:26916905..26916929 (25 bp)
AAGATATGCCATTCGAGCCGAGCAC
LOC_Os02g44480
Os.51892.1.S1_at--368--9071Chr02:26916863..26916887 (25 bp)
TGCTTGGTGCCTGTGTTCTACACAA
LOC_Os02g44480
Os.51892.1.S1_at--1137--991Chr02:26916821..26916845 (25 bp)
AGGTTGCGGCAAAGCGATTATTTCA
LOC_Os02g44480
Os.51892.1.S1_at--563--6551Chr02:26916806..26916830 (25 bp)
GATTATTTCAGCTTGATCCGGAGAA
LOC_Os02g44480
Os.51892.1.S1_at--898--1951Chr02:26916780..26916804 (25 bp)
ACTGGGAGTTACGTGCTGCTTGGTA
LOC_Os02g44480
Target Sequence 
AGGGAAGCCGAATACTGTGACCATCGCCACTTTGCTGTATGCATGCAGCCACGCCGGCATGATAGACGAAGGCATTAAGG
TGTTCAAGGACATGCGCAACGTCCATGGTTTGATGCCAAATGGCGAGCACTACTCGTGCCTGGTTGACATGCTTGGCCGT
GCTGGGAGGATTGAGGAGGCTCATCGTCTCATCCAAGATATGCCATTCGAGCCGAGCACCTCGGTATGGGGTGCTCTGCT
TGGTGCCTGTGTTCTACACAAGAATGTCGAGTTTGGGGAGGTTGCGGCAAAGCGATTATTTCAGCTTGATCCGGAGAACA
CTGGGAGTTACGTGCTGCTTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51892.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis