Browse Element(s) Details


Os.51901.1.S1_at

Description gb:AK064221.1
DB_XREF= gi:32974239
TID=Os.51901.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G01, full insert sequence.
FL= gb:AK064221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2175011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21710OsAffx.2709.1.S1_at11/112+12907605..12908006Ras-related protein Rab-2-B, putative
LOC_Os02g21720OsAffx.23366.2.S1_s_at1/112+12908783..12912373transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730Os.45173.1.S1_x_at4/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730Os.46314.3.S1_at2/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21730OsAffx.7362.1.S1_x_at1/112+12914264..12917866transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21740OsAffx.9790.1.S1_x_at1/112+12919172..12921972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21740OsAffx.8338.1.S1_x_at1/112+12919172..12921972retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21750Os.51901.1.S1_at11/112+12923846..12927799ABC transporter family protein, expressed
LOC_Os02g21760OsAffx.2710.1.S1_at10/112+12936339..12936895hypothetical protein
LOC_Os02g21770NANA2+12940359..12940869hypothetical protein
LOC_Os02g21780OsAffx.1646.1.S1_x_at1/112+12944745..12946019retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.10496.1.S1_at4/112+12946349..12949208retrotransposon protein, putative, unclassified
LOC_Os02g21790OsAffx.20628.1.S1_at1/112+12946349..12949208retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51901.1.S1_at--1149--1791Chr02:12924241..12924265 (25 bp)
ACCCCAAGGTGTTGCTCCTGGACGA
LOC_Os02g21750
Os.51901.1.S1_at--414--4131Chr02:12924185..12924209 (25 bp)
CGCATCGTGCAGGAGGCTCTGGACA
LOC_Os02g21750
Os.51901.1.S1_at--736--5611Chr02:12924098..12924122 (25 bp)
GACAAGATCGCCGTCATCAAGAACG
LOC_Os02g21750
Os.51901.1.S1_at--78--7731Chr02:12924026..12924050 (25 bp)
GGTGGAGCTTATGCGTCCCTTGTTG
LOC_Os02g21750
Os.51901.1.S1_at--517--9051Chr02:12923998..12924022 (25 bp)
TGCAGTCTAGCAGTTCGTGATTCGT
LOC_Os02g21750
Os.51901.1.S1_at--817--10611Chr02:12923978..12924002 (25 bp)
TTCGTGAACTGATATGCATACTGCT
LOC_Os02g21750
Os.51901.1.S1_at--936--4951Chr02:12923963..12923987 (25 bp)
GCATACTGCTAGCTATTGCTTCCTA
LOC_Os02g21750
Os.51901.1.S1_at--235--8811Chr02:12923947..12923971 (25 bp)
TGCTTCCTAGGACGAGTTTTCTTTC
LOC_Os02g21750
Os.51901.1.S1_at--890--171Chr02:12923918..12923942 (25 bp)
ATTTTATTGACATTCCACGCCGTAG
LOC_Os02g21750
Os.51901.1.S1_at--694--3571Chr02:12923908..12923932 (25 bp)
CATTCCACGCCGTAGTTTAATCCAA
LOC_Os02g21750
Os.51901.1.S1_at--509--671Chr02:12923876..12923900 (25 bp)
ATGACCACGTTGTTCTTTTAGTTAT
LOC_Os02g21750
Target Sequence 
ACCCCAAGGTGTTGCTCCTGGACGAGGCGACGAGCGCGCTGGACTCTGAGTCGGAGCGCATCGTGCAGGAGGCTCTGGAC
AGGGTGATGGTCGGGCGGACAACGGTGATCGTGGCGCACCGGCTGTCGACCATCACCGGCGCCGACAAGATCGCCGTCAT
CAAGAACGGCGTCGTTGCCGAGGAAGGCCGGCACGGGCGGCTGCTGCGCTTGCCCGGTGGAGCTTATGCGTCCCTTGTTG
CCTTGCAGTCTAGCAGTTCGTGATTCGTGAACTGATATGCATACTGCTAGCTATTGCTTCCTAGGACGAGTTTTCTTTCC
GAAATTTTATTGACATTCCACGCCGTAGTTTAATCCAAAAACAAAATGACCACGTTGTTCTTTTAGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis