Browse Element(s) Details


Os.51931.1.S1_at

Description gb:AK064313.1
DB_XREF= gi:32974331
TID=Os.51931.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51931 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C07, full insert sequence.
FL= gb:AK064313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g053701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05340Os.53862.1.S1_at11/118+2801929..2806682expressed protein
LOC_Os08g05340Os.54533.1.S1_at1/118+2801929..2806682expressed protein
LOC_Os08g05350Os.50927.1.S1_at10/118+2810099..2811734expressed protein
LOC_Os08g05360OsAffx.13097.1.S1_s_at11/118+2816089..2823719transposon protein, putative, Mutator sub-class
LOC_Os08g05370OsAffx.29043.1.S1_at11/118+2826824..2828871hypothetical protein
LOC_Os08g05370Os.51931.1.S1_at1/118+2826824..2828871hypothetical protein
LOC_Os08g05380OsAffx.29044.1.S1_at11/118+2831783..2832390hypothetical protein
LOC_Os08g05390OsAffx.25936.1.S1_s_at9/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.7.S1_s_at8/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.2.S1_x_at4/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05390OsAffx.25936.5.S1_x_at2/118+2833587..2836625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05400NANA8+2839514..2841489transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g05410OsAffx.29045.1.S1_at11/118+2846115..2851266hypothetical protein
LOC_Os08g05410OsAffx.29043.1.S1_at1/118+2846115..2851266hypothetical protein
LOC_Os08g05420NANA8+2853325..2858701transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51931.1.S1_at--528--2391Chr11:18082099..18082301 (25 bp)
AAACTGATGCTGTGTTTCCAATGGG
NONE
Os.51931.1.S1_at--206--4751Chr11:18080859..18080883 (25 bp)
GCTGATTCATAGTACCGTTCTGCAC
NONE
Os.51931.1.S1_at--925--2031Chr11:18080836..18080860 (25 bp)
ACTATGCTGCAATCAACTGTGGAGA
NONE
Os.51931.1.S1_at--942--6531Chr11:18080813..18080837 (25 bp)
GATTTCACTTTGCAGTATTGCGCTG
NONE
Os.51931.1.S1_at--1083--9151Chr11:18080795..18080819 (25 bp)
TGCGCTGCTCAGCTTGTACAGAGAT
NONE
Os.51931.1.S1_at--996--8951Chr11:18080740..18080764 (25 bp)
TGACAGATGTCAGCACCCGAATATA
NONE
Os.51931.1.S1_at--102--8331Chr11:18080696..18080720 (25 bp)
GGCTCTGGGAACACTTTGATGCGCT
NONE
Os.51931.1.S1_at--1083--8291Chr11:18080650..18080674 (25 bp)
GGCTTTTATCACATCCTCTTATTGA
NONE
Os.51931.1.S1_at--1058--7811Chr11:18080623..18080647 (25 bp)
GGTCACTATTGGATGTCCCCATGGA
NONE
Os.51931.1.S1_at--259--4671Chr11:18080540..18080564 (25 bp)
GCGGGCATGTGTCCTATGCTAAGTT
NONE
Os.51931.1.S1_at--346--10474Chr11:21947370..21947394 (25 bp)
TTACATCTACCACAATTTCTCCATA
NONE
Target Sequence 
AAACTGATGCTGTGTTTCCAATGGGGCACCATGCATGGTGATGTCATGGTTTGTTTATCAAGGAATTACAGGAGATTGAT
TGTGTACAAGAAGCTGATTCATAGTACCGTTCTGCACTATGCTGCAATCAACTGTGGAGATTTCACTTTGCAGTATTGCG
CTGCTCAGCTTGTACAGAGATTGGATGATGCAGAACATATGTATGGACTCCTGACAGATGTCAGCACCCGAATATACTTA
AACCAACTGGTTTTTGGCTCTGGGAACACTTTGATGCGCTGAAGAAGCATAACAAGGCTGAGGCTTTTATCACATCCTCT
TATTGATGGGTCACTATTGGATGTCCCCATGGAAGACTTATTTTTGATAGAGAAGTTTATTGAAAACTAGGAAGGTAGCC
CGCGCATTCGCGCGGGCATGTGTCCTATGCTAAGTTTGAGATATTTGTAAGAGTGAAATGTTACATCTACCACAATTTCT
CCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis