Browse Element(s) Details


Os.51938.1.S1_at

Description gb:AK100929.1
DB_XREF= gi:32986138
TID=Os.51938.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033134D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135J01, full insert sequence.
FL= gb:AK100929.1 gb:AK064332.1 gb:AK103635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1879011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18740Os.5616.1.S1_at11/113+10481046..10482322Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g18740Os.34729.2.S1_x_at1/113+10481046..10482322Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g18750NANA3+10489860..10490242hypothetical protein
LOC_Os03g18760OsAffx.12928.1.S1_at1/113+10492607..10493209hypothetical protein
LOC_Os03g18770Os.10841.1.S1_at11/113+10496193..10497392Wound-induced protein 1, putative, expressed
LOC_Os03g18790Os.51938.1.S1_at11/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18790Os.28438.2.S1_a_at1/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18800NANA3+10515709..10516044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g18810Os.4665.1.S1_at11/113+10521895..10525292Aspartate aminotransferase, putative, expressed
LOC_Os03g18820Os.16827.2.S1_at11/113+10526060..10528045Glycosyltransferase 5, putative, expressed
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007568biological_processaging
GO:0009621biological_processresponse to pathogenic fungi
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51938.1.S1_at--1032--3891Chr03:10505353..10505377 (25 bp)
CTGGGCGTGCAGATGGCAGCCATCA
LOC_Os03g18790
Os.51938.1.S1_at--870--9851Chr03:10505206..10505230 (25 bp)
TACACCGTGGCCATGTATACGGTAG
LOC_Os03g18790
Os.51938.1.S1_at--30--6491Chr03:10505143..10505167 (25 bp)
GATACGTATAAGGTCGTCGTCTACA
LOC_Os03g18790
Os.51938.1.S1_at--402--7211Chr03:10505128..10505152 (25 bp)
GTCGTCTACACGTACTGCAGGTTGT
LOC_Os03g18790
Os.51938.1.S1_at--235--6171Chr03:10505049..10505073 (25 bp)
GAGGACGGGTAATTTCGCTTGAAAT
LOC_Os03g18790
Os.51938.1.S1_at--840--10431Chr03:10504999..10505023 (25 bp)
TTAGCAATGACATCCGTGACGGTAC
LOC_Os03g18790
Os.51938.1.S1_at--384--8651Chr03:10504954..10504978 (25 bp)
TGTGATAACGGCTACTGGGCCATCA
LOC_Os03g18790
Os.51938.1.S1_at--432--1731Chr03:10504930..10504954 (25 bp)
ACCATGGGCCTTTTAATCACTGTGA
LOC_Os03g18790
Os.51938.1.S1_at--157--1971Chr03:10504912..10504936 (25 bp)
ACTGTGACATGTCTGGATCTGTGTG
LOC_Os03g18790
Os.51938.1.S1_at--507--3891Chr03:10504894..10504918 (25 bp)
CTGTGTGGACACAAGGGCCGAATAG
LOC_Os03g18790
Os.51938.1.S1_at--97--1251Chr03:10504857..10504881 (25 bp)
AGATTGGACCTATTTCGGCCTGACG
LOC_Os03g18790
Target Sequence 
CTGGGCGTGCAGATGGCAGCCATCAACATGGAGAGGTCGGCCACGTACAGCGGCGAGCACCACCCCGCCGCCATGCGTCC
GCCTGTGCCCCCGCTGATGCAAATGGACCAGGAATAGTGGCAGCGGCAGCAGCANGCGCGCCCTAGCTACACCGTGGCCA
TGTATACGGTAGTATTAATTCTATGATACGTACGGTAGTATTAATTCTATGATACGTATAAGGTCGTCGTCTACACGTAC
TGCAGGTTGTATTAGACTATTAGCTGGTTTTTATACATACGGATTCGTTTGTTTGATAGTAAAAGAGGACGGGTAATTTC
GCTTGAAATTGAATTAGACACGGGGTGATCGAGGTTAGCAATGACATCCGTGACGGTACGGGAAGCCGGGAAGGATTGTT
GTGATAACGGCTACTGGGCCATCACCATGGGCCTTTTAATCACTGTGACATGTCTGGATCTGTGTGGACACAAGGGCCGA
ATAGGAGTTGAGGCTCAGATTGGACCTATTTCGGCCTGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis