Browse Element(s) Details


Os.53751.1.S1_at

Description gb:AK099693.1
DB_XREF= gi:32984902
TID=Os.53751.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074C22, full insert sequence.
FL= gb:AK099693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1884011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18790Os.51938.1.S1_at11/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18790Os.28438.2.S1_a_at1/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18800NANA3+10515709..10516044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g18810Os.4665.1.S1_at11/113+10521895..10525292Aspartate aminotransferase, putative, expressed
LOC_Os03g18820Os.16827.2.S1_at11/113+10526060..10528045Glycosyltransferase 5, putative, expressed
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18870Os.5615.1.S1_at10/113+10550725..10552300DnaJ, putative, expressed
LOC_Os03g18880Os.53278.1.S1_at11/113+10554429..10555731retrotransposon protein, putative, unclassified, expressed
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53751.1.S1_at--221--3051Chr03:10538824..10538848 (25 bp)
AATCGATGCTAATTTACCCAACAAG
LOC_Os03g18840
Os.53751.1.S1_at--671--5111Chr03:10538979..10539003 (25 bp)
GCACATCTAAGATCCTTGAAGCCTG
LOC_Os03g18840
Os.53751.1.S1_at--965--4471Chr03:10538999..10539023 (25 bp)
GCCTGGAGATGCTTGCGAACTTTTA
LOC_Os03g18840
Os.53751.1.S1_at--293--6811Chr03:10539169..10539193 (25 bp)
GTTTTGCGGTGGATATACTGCTTAT
LOC_Os03g18840
Os.53751.1.S1_at--855--151Chr03:10539196..10539220 (25 bp)
ATTATCCATGGTCGTTTTATCCCCT
LOC_Os03g18840
Os.53751.1.S1_at--202--4831Chr03:10540336..10540455 (25 bp)
GCTCATGGCTCAGATCGTCAAGGAT
LOC_Os03g18840
Os.53751.1.S1_at--1072--10511Chr03:10540497..10540521 (25 bp)
TTCAGCGGCTGCTCAGTCTGATGAA
LOC_Os03g18840
Os.53751.1.S1_at--1055--6251Chr03:10540661..10540685 (25 bp)
GATTACCCCGTAGTCAGGTTTGTAT
LOC_Os03g18840
Os.53751.1.S1_at--443--6891Chr03:10540682..10540706 (25 bp)
GTATGACTAAGCAACCCCGAAGGGT
LOC_Os03g18840
Os.53751.1.S1_at--118--4151Chr03:10540696..10540720 (25 bp)
CCCCGAAGGGTTGCGCAGAATTTTG
LOC_Os03g18840
Os.53751.1.S1_at--975--5771Chr03:10540720..10540744 (25 bp)
GACGAGGCGAAGCATCCTCTGAATT
LOC_Os03g18840
Target Sequence 
AATCGATGCTAATTTACCCAACAAGAAGATTCGAGCACATCTAAGATCCTTGAAGCCTGGAGATGCTTGCGAACTTTTAG
AAAAATTAGTATCTTCATGGAAAACAAGATCTGGTAGTGCAGAGGTTGTTTTGCGGTGGATATACTGCTTATTAATTATC
CATGGTCGTTTTATCCCCTTTGAGAAATCTAAAAAAATAATTAGCGNCCTTGAGAAGATGTGTGGGGAAAGATACAAAGC
AGCTGAAGATTTACTGAAGCTTTNTGGTCGTCTTCGATTGCTCATGGCTCAGATCGTCAAGGATCCAAANGATGTTTNTG
AGCTTCCATCAGAGGAGATGCAGGATTCAGCGGCTGCTCAGTCTGATGAAGAGGAGGAAGATGATGAAATTGATGAANCG
GTGTATGGTGAAGACGCTGATTCGTCTCAAACAAGTGATGACGACGCTGAANTAGAANCNCTGAGACTAAGCGTAGCATT
CTTATGATGTGTTGTTTTATATTCAANCTTGATTACCCCGTAGTCAGGTTTGTATGACTAAGCAACCCCGAAGGGTTGCG
CAGAATTTTGACGAGGCGAAGCATCCTCTGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis