Browse Element(s) Details


Os.53030.1.S1_at

Description gb:AK070513.1
DB_XREF= gi:32980537
TID=Os.53030.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023057H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057H15, full insert sequence.
FL= gb:AK070513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1886011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18810Os.4665.1.S1_at11/113+10521895..10525292Aspartate aminotransferase, putative, expressed
LOC_Os03g18820Os.16827.2.S1_at11/113+10526060..10528045Glycosyltransferase 5, putative, expressed
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18870Os.5615.1.S1_at10/113+10550725..10552300DnaJ, putative, expressed
LOC_Os03g18880Os.53278.1.S1_at11/113+10554429..10555731retrotransposon protein, putative, unclassified, expressed
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed
LOC_Os03g18900NANA3+10570513..10571225expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042545biological_processcell wall modification
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53030.1.S1_at--666--9051Chr03:10544212..10544236 (25 bp)
TGCTACTACGCCGAGGTGGAGAACC
LOC_Os03g18860
Os.53030.1.S1_at--657--7791Chr03:10544144..10544168 (25 bp)
GGTCAAGACGGTCACGTACCAGCAG
LOC_Os03g18860
Os.53030.1.S1_at--1093--9831Chr03:10544107..10544131 (25 bp)
TACACCGTCGAGAGGTTCATCCAGG
LOC_Os03g18860
Os.53030.1.S1_at--789--1391Chr03:10544079..10544103 (25 bp)
AGACGTGGCTCCCAAAGTTCGGCGT
LOC_Os03g18860
Os.53030.1.S1_at--638--6471Chr03:10544012..10544036 (25 bp)
GATACACTGATCCATCGTGCGTCGT
LOC_Os03g18860
Os.53030.1.S1_at--144--7171Chr03:10543989..10544013 (25 bp)
GTCTCGTCGGCCTATATATATGCTA
LOC_Os03g18860
Os.53030.1.S1_at--846--4851Chr03:10543968..10543992 (25 bp)
GCTAGCGGGTAATTGTTTGCATCAT
LOC_Os03g18860
Os.53030.1.S1_at--473--7211Chr03:10543934..10543958 (25 bp)
GTCGTCAACTCCTGTGATCTCTATA
LOC_Os03g18860
Os.53030.1.S1_at--719--6411Chr03:10543919..10543943 (25 bp)
GATCTCTATAGCGTTCTCTGCTGTA
LOC_Os03g18860
Os.53030.1.S1_at--343--10591Chr03:10543906..10543930 (25 bp)
TTCTCTGCTGTACTCTAATCCATAG
LOC_Os03g18860
Os.53030.1.S1_at--571--10591Chr03:10543869..10543893 (25 bp)
TTCTCCATAGAATTTGCGTACGCGT
LOC_Os03g18860
Target Sequence 
TGCTACTACGCCGAGGTGGAGAACCGCGGCGACGGCGCCGACATGAGCAAGCGCGCCANGTGGAGAGGGGTCAAGACGGT
CACGTACCAGCAGGCGCAGCAGAAGTACACCGTCGAGAGGTTCATCCAGGGACAGACGTGGCTCCCAAAGTTCGGCGTGC
CGTTCATCCCCGGCCTGTTGCCGCAGGAGCAGTCAGGGAGGATACACTGATCCATCGTGCGTCGTCTCGTCGGCCTATAT
ATATGCTAGCGGGTAATTGTTTGCATCATGTTGCTGTCGTCGTCAACTCCTGTGATCTCTATAGCGTTCTCTGCTGTACT
CTAATCCATAGAAATGCATTCTTTTCTCCATAGAATTTGCGTACGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis