Browse Element(s) Details


Os.16827.2.S1_at

Description gb:AK060863.1
DB_XREF= gi:32970881
TID=Os.16827.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16827 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G06, full insert sequence.
FL= gb:AK060863.1 gb:AK098859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1882011/11Glycosyltransferase 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18790Os.51938.1.S1_at11/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18790Os.28438.2.S1_a_at1/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18800NANA3+10515709..10516044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g18810Os.4665.1.S1_at11/113+10521895..10525292Aspartate aminotransferase, putative, expressed
LOC_Os03g18820Os.16827.2.S1_at11/113+10526060..10528045Glycosyltransferase 5, putative, expressed
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18870Os.5615.1.S1_at10/113+10550725..10552300DnaJ, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16827.2.S1_at--1131--4911Chr03:10526975..10526999 (25 bp)
GCTTGAGAATTACCATCCAGGACTT
LOC_Os03g18820
Os.16827.2.S1_at--159--7751Chr03:10526950..10526974 (25 bp)
GGTGATCACCGGTGGCCACTGGTCA
LOC_Os03g18820
Os.16827.2.S1_at--762--8591Chr03:10526931..10526955 (25 bp)
TGGTCACTCACTTTGTCGGATGCAA
LOC_Os03g18820
Os.16827.2.S1_at--669--5031Chr03:10526861..10526885 (25 bp)
GCAGATGGAGCGTGCTTTCAATTTT
LOC_Os03g18820
Os.16827.2.S1_at--390--791Chr03:10526811..10526835 (25 bp)
ATGGGTTTACACACAAGTCGCTTGG
LOC_Os03g18820
Os.16827.2.S1_at--316--8211Chr03:10526763..10526787 (25 bp)
GGAATGAGACTAGCAACCCACTTGA
LOC_Os03g18820
Os.16827.2.S1_at--565--7991Chr03:10526732..10526756 (25 bp)
GGATGAACTAGGGTTGCTCCACCCA
LOC_Os03g18820
Os.16827.2.S1_at--923--111Chr03:10526665..10526689 (25 bp)
ATTAGAGTACAATGCCACGCGTTAT
LOC_Os03g18820
Os.16827.2.S1_at--588--4411Chr03:10526652..10526676 (25 bp)
GCCACGCGTTATTTCGTTCATTGTA
LOC_Os03g18820
Os.16827.2.S1_at--512--4031Chr03:10526638..10526662 (25 bp)
CGTTCATTGTAGATCCTTTTGGGTC
LOC_Os03g18820
Os.16827.2.S1_at--544--8171Chr03:10526438..10526462 (25 bp)
GGAACTCTGTTAATTGATCACCACT
LOC_Os03g18820
Target Sequence 
GCTTGAGAATTACCATCCAGGACTTGGTGATCACCGGTGGCCACTGGTCACTCACTTTGTCGGATGCAAGCCGTGTGGGA
AGTTTGGGGATTACCCTGTGGAGAGGTGCCTCAAGCAGATGGAGCGTGCTTTCAATTTTGGGGATAATCAGATCTTGCAA
ATGTATGGGTTTACACACAAGTCGCTTGGCAGCAGGAAGGTGAAGAGGATCAGGAATGAGACTAGCAACCCACTTGATGT
CAAGGATGAACTAGGGTTGCTCCACCCAGCATTCAAGGCCATGAAGACTACTTCTACGTGATAAGTGATAATTAGAGTAC
AATGCCACGCGTTATTTCGTTCATTGTAGATCCTTTTGGGTCTAAAATCTTAAAAAGGTGTTCTTTTTGTAGACTTGGGT
TGACAAGGGAGTTTGGGTTGGGATCAAACATCAAAGGATGGATATCTATGTTGTAATGTGAAATTTTAGGAGAACAATGG
TATGTTTATTGCTGGCATAATTTATGTCTTACACNTNCTAGAAATTGAGTTAGTGAAGGGAACTCTGTTAATTGATCACC
ACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16827.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis