Browse Element(s) Details


Os.54126.1.S1_at

Description gb:AK102070.1
DB_XREF= gi:32987279
TID=Os.54126.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54126 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082G07, full insert sequence.
FL= gb:AK102070.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1883010/11Programmed cell death protein 2, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18790Os.51938.1.S1_at11/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18790Os.28438.2.S1_a_at1/113+10504789..10510404Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g18800NANA3+10515709..10516044retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g18810Os.4665.1.S1_at11/113+10521895..10525292Aspartate aminotransferase, putative, expressed
LOC_Os03g18820Os.16827.2.S1_at11/113+10526060..10528045Glycosyltransferase 5, putative, expressed
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18870Os.5615.1.S1_at10/113+10550725..10552300DnaJ, putative, expressed
LOC_Os03g18880Os.53278.1.S1_at11/113+10554429..10555731retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54126.1.S1_at--1013--591Chr03:10532778..10532802 (25 bp)
ATGCCGATATCCCATCATGTAGCTA
LOC_Os03g18830
Os.54126.1.S1_at--383--4851Chr03:10532757..10532781 (25 bp)
GCTACTGTAGAGGTCCACTATGCTA
LOC_Os03g18830
Os.54126.1.S1_at--90--6471Chr03:10532142..10532166 (25 bp)
GATAATGCCACAGCTGCTTTATTAC
LOC_Os03g18830
Os.54126.1.S1_at--938--6431Chr03:10531241..10531265 (25 bp)
GATCATCTGCACTCATTTTTGACGT
LOC_Os03g18830
Os.54126.1.S1_at--652--6491Chr03:10531187..10531211 (25 bp)
GATAGATTTGTTTTCCTCTACTGGG
LOC_Os03g18830
Os.54126.1.S1_at--268--6591Chr03:10531135..10531159 (25 bp)
GATTCCAGGTCAGTTGGTCGTGCAA
LOC_Os03g18830
Os.54126.1.S1_at--1060--7791Chr03:10531089..10531113 (25 bp)
GGTCCCAAATGCTTTGTGCTCGCTA
LOC_Os03g18830
Os.54126.1.S1_at--812--7311NONE
GTGCTCGCTACATTGGTTTTGATCT
NONE
Os.54126.1.S1_at--339--1091Chr03:10531038..10531062 (25 bp)
AGGGCCCATTTAGCGCATTTGATAA
LOC_Os03g18830
Os.54126.1.S1_at--1049--231Chr03:10531010..10531034 (25 bp)
ATATATGTGTTCCTTGTGGTCACCA
LOC_Os03g18830
Os.54126.1.S1_at--257--7111Chr03:10530992..10531016 (25 bp)
GTCACCACCGTGCTTGGTTTAGTAT
LOC_Os03g18830
Target Sequence 
ATGCCGATATCCCATCATGTAGCTACTGTAGAGGTCCACTATGCTATGAATTTCAGATAATGCCACAGCTGCTTTATTAC
TTTGGTGTGAAAAATGAGCCAGACTCTCTTGATTGGGCAACAATTGTTGTGTACACATGTAAAGGATCATGCGATCAAAA
TGTCAGCTACAAGGAGGAATTTGCATGGGTTCAGTTATACCCTACAACAACCACAAGGTCATGATAATGTTTATGGTTTA
TTTGCCCCCACAGAGTAAGCTTTGTAATGGCCTACAGGGAGCTGGCTGAGATCATCTGCACTCATTTTTGACGTGAAGTC
GGGAGCTCAACTGATCAAGACGAGATAGATTTGTTTTCCTCTACTGGGGATTTTTTAGTGGGGTGTGGTTTCGATGATTC
CAGGTCAGTTGGTCGTGCAATGTTGAGCAGCGTAGGGCCGTGGTCCCAAATGCTTTGTGCTCGCTACATTGGTTTTGATC
TGCTAGACCACTAGGGCCCATTTAGCGCATTTGATAACAAATATATGTGTTCCTTGTGGTCACCACCGTGCTTGGTTTAG
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis