Browse Element(s) Details


Os.53278.1.S1_at

Description gb:AK071770.1
DB_XREF= gi:32981793
TID=Os.53278.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112P05, full insert sequence.
FL= gb:AK071770.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1888011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18870Os.5615.1.S1_at10/113+10550725..10552300DnaJ, putative, expressed
LOC_Os03g18880Os.53278.1.S1_at11/113+10554429..10555731retrotransposon protein, putative, unclassified, expressed
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed
LOC_Os03g18900NANA3+10570513..10571225expressed protein
LOC_Os03g18910Os.49999.1.S1_x_at11/113+10578122..10580561COBRA-like protein 7 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53278.1.S1_at--722--2691Chr03:10554953..10554977 (25 bp)
AAGCTCACGGCACTCTTGGATCTGA
LOC_Os03g18880
Os.53278.1.S1_at--189--4351Chr03:10554891..10554915 (25 bp)
CCAGTTCGAGGAGCGCTTGTACCAT
LOC_Os03g18880
Os.53278.1.S1_at--1145--10791Chr03:10554875..10554899 (25 bp)
TTGTACCATGCCAAGCTGTTCGATC
LOC_Os03g18880
Os.53278.1.S1_at--295--1491Chr03:10554842..10554866 (25 bp)
AGCAACTGCTTCGACGTGGCATTAT
LOC_Os03g18880
Os.53278.1.S1_at--57--8011Chr03:10554784..10554808 (25 bp)
GGATGTGGCAGCAAACTCCTGCTAC
LOC_Os03g18880
Os.53278.1.S1_at--250--9171Chr03:10554747..10554771 (25 bp)
TGCCCAATCGGCTCTGGTGCAAGAG
LOC_Os03g18880
Os.53278.1.S1_at--22--2351Chr03:10554677..10554701 (25 bp)
AAAGAATGAGATGCCGGCCTCTGTC
LOC_Os03g18880
Os.53278.1.S1_at--1094--8711Chr03:10554656..10554680 (25 bp)
TGTCGATTTGCTCCGGTGAACTGTG
LOC_Os03g18880
Os.53278.1.S1_at--440--3691Chr03:10554512..10554536 (25 bp)
CTTTGGTTCGATTGTGGTGCTCAGT
LOC_Os03g18880
Os.53278.1.S1_at--32--7311Chr03:10554496..10554520 (25 bp)
GTGCTCAGTCTGAAGAAGGTCCTTA
LOC_Os03g18880
Os.53278.1.S1_at--867--8631Chr03:10554464..10554488 (25 bp)
TGGGATTCAGTTATGCGTTGCTTCT
LOC_Os03g18880
Target Sequence 
AAGCTCACGGCACTCTTGGATCTGAGGCAGGAGGGGATCATGACAGTGAGCGAGTACAGAGACCAGTTCGAGGAGCGCTT
GTACCATGCCAAGCTGTTCGATCCAGTCTCCAGCAACTGCTTCGACGTGGCATTATTCATAAGAGGCCTGCGAGAAGAGA
TCAGAGATAGGATGTGGCAGCAAACTCCTGCTACCGTGGATGCTGCTGCCCAATCGGCTCTGGTGCAAGAGGCGTTGTAT
AACTTGGAAATGCAGAGAGCTCAGAGGGACCCGTATAAAGAATGAGATGCCGGCCTCTGTCGATTTGCTCCGGTGAACTG
TGGGAGTAGTGCTACTGTGTTGTTTTTATCATGTCGATGGTCTTTGGTTCGATTATGCTGATTAGTTTGAGGAAGGTCCT
TGGGAATTTTGGGATTCAGTTATTTCTAGCATGTCGATGGTCTTTGGTTCGATTGTGGTGCTCAGTCTGAAGAAGGTCCT
TAGGATTTTTGGGATTCAGTTATGCGTTGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis