Browse Element(s) Details


Os.49999.1.S1_x_at

Description gb:AK119578.1
DB_XREF= gi:37989201
TID=Os.49999.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-117-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-B09, full insert sequence.
FL= gb:AK119578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1891011/11COBRA-like protein 7 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18880Os.53278.1.S1_at11/113+10554429..10555731retrotransposon protein, putative, unclassified, expressed
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed
LOC_Os03g18900NANA3+10570513..10571225expressed protein
LOC_Os03g18910Os.49999.1.S1_x_at11/113+10578122..10580561COBRA-like protein 7 precursor, putative, expressed
LOC_Os03g18930OsAffx.12930.1.S1_at11/113+10584007..10584580hypothetical protein
LOC_Os03g18940Os.49715.1.S1_at11/113+10585919..10591295exonuclease family protein, expressed
LOC_Os03g18950OsAffx.3272.1.S1_at10/113+10592566..10594614Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os03g18960OsAffx.3273.1.S1_at11/113+10596815..10599556calmodulin-binding protein, putative, expressed
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49999.1.S1_x_at--1162--6111Chr03:10579975..10579999 (25 bp)
GAGTGGATCAGACTACCTTGTGCCT
LOC_Os03g18910
Os.49999.1.S1_x_at--966--7111Chr03:10580011..10580035 (25 bp)
GTCAGTGCTCTCATTCACCAAGAAG
LOC_Os03g18910
Os.49999.1.S1_x_at--221--2751Chr03:10580030..10580054 (25 bp)
AAGAAGCTGACTCCTGGCATCAATG
LOC_Os03g18910
Os.49999.1.S1_x_at--792--6671Chr03:10580057..10580081 (25 bp)
GTTGCTGGAGATGGTTTCCCTTCAA
LOC_Os03g18910
Os.49999.1.S1_x_at--113--9711Chr03:10580078..10580102 (25 bp)
TCAAAGGTCTTCTTCAACGGCGACG
LOC_Os03g18910
Os.49999.1.S1_x_at--386--8391Chr03:10580096..10580120 (25 bp)
GGCGACGAGTGTGCAATGCCTCAGA
LOC_Os03g18910
Os.49999.1.S1_x_at--1066--271Chr03:10580136..10580160 (25 bp)
ATAGTGGATTCAGGACCCATCTCAG
LOC_Os03g18910
Os.49999.1.S1_x_at--195--10611Chr03:10580194..10580218 (25 bp)
TTCGGCCTTCGTATTGCTTCAGCAA
LOC_Os03g18910
Os.49999.1.S1_x_at--309--9291Chr03:10580235..10580259 (25 bp)
TCCGATTCTTTCATTCTTTCAGGTG
LOC_Os03g18910
Os.49999.1.S1_x_at--692--9471Chr03:10580253..10580277 (25 bp)
TCAGGTGGTTGGATCGACGCCATTT
LOC_Os03g18910
Os.49999.1.S1_x_at--840--6831Chr03:10580293..10580317 (25 bp)
GTTTCTGGCGGTTTACTAGATGCGT
LOC_Os03g18910
Target Sequence 
GAGTGGATCAGACTACCTTGTGCCTGGGAAGCAGCAGTCAGTGCTCTCATTCACCAAGAAGCTGACTCCTGGCATCAATG
TTGTTGCTGGAGATGGTTTCCCTTCAAAGGTCTTCTTCAACGGCGACGAGTGTGCAATGCCTCAGAGGATTCCAATGAGC
AATAGTGGATTCAGGACCCATCTCAGCAGTGTCCTCTCACTGGTTTTGGTCCTGGCTGCTTCGGCCTTCGTATTGCTTCA
GCAATAATCNTGGCCGTTGCTCCGATTCTTTCATTCTTTCAGGTGGTTGGATCGACGCCATTTGTAAGAAACCTTTTTGT
TTCTGGCGGTTTACTAGATGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49999.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis