Browse Element(s) Details


OsAffx.3273.1.S1_at

Description tigr:9631.m01872
TID=OsAffx.3273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1896011/11calmodulin-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18910Os.49999.1.S1_x_at11/113+10578122..10580561COBRA-like protein 7 precursor, putative, expressed
LOC_Os03g18930OsAffx.12930.1.S1_at11/113+10584007..10584580hypothetical protein
LOC_Os03g18940Os.49715.1.S1_at11/113+10585919..10591295exonuclease family protein, expressed
LOC_Os03g18950OsAffx.3272.1.S1_at10/113+10592566..10594614Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os03g18960OsAffx.3273.1.S1_at11/113+10596815..10599556calmodulin-binding protein, putative, expressed
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed
LOC_Os03g18990OsAffx.25136.1.S1_x_at11/113+10622599..10624308hypothetical protein
LOC_Os03g18990OsAffx.19217.1.S1_x_at1/113+10622599..10624308hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3273.1.S1_at--218--3351Chr03:10598696..10598720 (25 bp)
CACGGGAGTGCGTTCTGGACGACAA
LOC_Os03g18960
OsAffx.3273.1.S1_at--530--10331Chr03:10598723..10598747 (25 bp)
TTTACTCCTACTGCAGCGGGCATGG
LOC_Os03g18960
OsAffx.3273.1.S1_at--789--4651Chr03:10598738..10598762 (25 bp)
GCGGGCATGGGATAATCCTTCTCTT
LOC_Os03g18960
OsAffx.3273.1.S1_at--770--10571Chr03:10598756..10598780 (25 bp)
TTCTCTTCAACTGCATCCATGAGGT
LOC_Os03g18960
OsAffx.3273.1.S1_at--900--10811Chr03:10598780..10598804 (25 bp)
TTGTCGGTGTGATCGTTGGAAGCCA
LOC_Os03g18960
OsAffx.3273.1.S1_at--1087--10851Chr03:10598795..10598819 (25 bp)
TTGGAAGCCACTGCTTCACTCTGAA
LOC_Os03g18960
OsAffx.3273.1.S1_at--550--10511Chr03:10598809..10598833 (25 bp)
TTCACTCTGAATGCTCTTACTCCAA
LOC_Os03g18960
OsAffx.3273.1.S1_at--995--10471Chr03:10598825..10599043 (25 bp)
TTACTCCAACACAGAAGGCGCTGGT
LOC_Os03g18960
OsAffx.3273.1.S1_at--1160--1231Chr03:10599049..10599073 (25 bp)
AGTTGCAGCAAGACGCCTACAAGTT
LOC_Os03g18960
OsAffx.3273.1.S1_at--1018--6671Chr03:10599071..10599095 (25 bp)
GTTCCCCAACCGCATAGTGGAATTC
LOC_Os03g18960
OsAffx.3273.1.S1_at--181--9171Chr03:10599203..10599225 (23 bp)
TGCCCATTGCTTTCCATCAGGTGAG
LOC_Os03g18960
Target Sequence 
CACGGGAGTGCGTTCTGGACGACAAGCTTTACTCCTACTGCAGCGGGCATGGGATAATCCTTCTCTTCAACTGCATCCAT
GAGGTTGTCGGTGTGATCGTTGGAAGCCACTGCTTCACTCTGAATGCTCTTACTCCAACACAGAAGGCGCTGGTGGTGAA
GTTGCAGCAAGACGCCTACAAGTTCCCCAACCGCATAGTGGAATTCAAGGTGCAGTCCCAGTGCACCAGCCAGTCATCAC
CAACCACCATCCAGTCCCAGTCCGTGCAGATGCCGGCTTCAGAGAACGCACAGATTCTGAACCTACCTCAAGGTGCCCAT
TGCTTTCCATCAGGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis