Browse Element(s) Details


Os.54684.1.S1_at

Description gb:AK106465.1
DB_XREF= gi:32991674
TID=Os.54684.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-H04, full insert sequence.
FL= gb:AK106465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g189807/11Kinesin-4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18930OsAffx.12930.1.S1_at11/113+10584007..10584580hypothetical protein
LOC_Os03g18940Os.49715.1.S1_at11/113+10585919..10591295exonuclease family protein, expressed
LOC_Os03g18950OsAffx.3272.1.S1_at10/113+10592566..10594614Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os03g18960OsAffx.3273.1.S1_at11/113+10596815..10599556calmodulin-binding protein, putative, expressed
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed
LOC_Os03g18990OsAffx.25136.1.S1_x_at11/113+10622599..10624308hypothetical protein
LOC_Os03g18990OsAffx.19217.1.S1_x_at1/113+10622599..10624308hypothetical protein
LOC_Os03g19000OsAffx.12931.1.S1_at11/113+10624831..10625595Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_s_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19020Os.8914.1.S1_at11/113+10630243..10634687PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54684.1.S1_at--666--2071Chr03:10610049..10610073 (25 bp)
ACATTGCAACAAGTGATTCCTCAGA
LOC_Os03g18980
Os.54684.1.S1_at--429--6331Chr03:10610020..10610044 (25 bp)
GATGCACTATGGCAGTTCAATGTCC
LOC_Os03g18980
Os.54684.1.S1_at--683--1351NONE
AGAGAGCTCAGATACCAGGACACCA
NONE
Os.54684.1.S1_at--529--3591Chr03:10609289..10609313 (25 bp)
CATTCTCAAATACCATCTGCTTCGA
LOC_Os03g18980
Os.54684.1.S1_at--146--491Chr03:10609242..10609266 (25 bp)
ATCTGGACGGCAACCTTTAAGTGGT
LOC_Os03g18980
Os.54684.1.S1_at--782--5291Chr03:10609207..10609231 (25 bp)
GAAGGCTCTCATCAAATGGTAGACA
LOC_Os03g18980
Os.54684.1.S1_at--595--9591Chr03:10609134..10609158 (25 bp)
TCTTGGCTTTCTTTCAGTGTTTGTC
LOC_Os03g18980
Os.54684.1.S1_at--359--6151Chr03:10609097..10609121 (25 bp)
GAGGTTTTTCTCGAGTACAGCAATG
LOC_Os03g18980
Os.54684.1.S1_at--1079--10811NONE
TTGTGATCCCAACAACTGGTGTGTG
NONE
Os.54684.1.S1_at--341--7471Chr03:10609015..10609039 (25 bp)
GTGTGTGAGGCCATTAACCTTTTTT
NONE
Os.54684.1.S1_at--600--3491Chr03:10608976..10609000 (25 bp)
CAGGCTATGTTGAGTTCTTGCTAAT
NONE
Target Sequence 
ACATTGCAACAAGTGATTCCTCAGAATCAGATGCACTATGGCAGTTCAATGTCCAAAGCATCAATAGTTCAATTAGCGAG
AATGGTTCAAAGATCAAGAAACCACAAACGAAGCTAAGAGAGAGCTCAGATACCAGGACACCACTCCATTCTCAAATACC
ATCTGCTTCGAGAAAAACCTCCAATGGAAATAGATCTGGACGGCAACCTTTAAGTGGTAGCGATAGCAGAAGGCTCTCAT
CAAATGGTAGACATGCTGGTACAAAGTAGGGACTACTACAATGATCATGTGCATTTTTTTTTCTTGGCTTTCTTTCAGTG
TTTGTCATGAGAGATTGCGAGGTTTTTCTCGAGTACAGCAATGAGTGACAATAAACCCAATTGATTGTCTCAGTGTGGTG
AGTTGTGATCCCAACAACTGGTGTGTGAGGCCATTAACCTTTTTTTTTATTTGGCCTATCAGGCTATGTTGAGTTCTTGC
TAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis