Browse Element(s) Details


OsAffx.25136.1.S1_x_at

Description tigr:9631.m01875
TID=OsAffx.25136.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 70_ck11_d11fwd
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1899011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18960OsAffx.3273.1.S1_at11/113+10596815..10599556calmodulin-binding protein, putative, expressed
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed
LOC_Os03g18990OsAffx.25136.1.S1_x_at11/113+10622599..10624308hypothetical protein
LOC_Os03g18990OsAffx.19217.1.S1_x_at1/113+10622599..10624308hypothetical protein
LOC_Os03g19000OsAffx.12931.1.S1_at11/113+10624831..10625595Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_s_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19020Os.8914.1.S1_at11/113+10630243..10634687PHD-finger family protein, expressed
LOC_Os03g19030OsAffx.15200.2.S1_x_at5/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.2.S1_at3/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.3.S1_s_at1/113+10640221..10640985hypothetical protein
LOC_Os03g19040Os.54627.1.S1_at11/113+10641421..10642485expressed protein
LOC_Os03g19050Os.35344.18.S1_x_at10/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050Os.35344.3.S1_x_at9/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_at5/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_x_at4/113+10643766..10650554SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25136.1.S1_x_at--411--6631Chr03:10623131..10623155 (25 bp)
GTTGTGGATGGCGACAGCTTCATCG
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--345--10831Chr03:10623132..10623156 (25 bp)
TTGTGGATGGCGACAGCTTCATCGA
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--277--8671Chr03:10623133..10623157 (25 bp)
TGTGGATGGCGACAGCTTCATCGAC
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--780--311Chr03:10623804..10623828 (25 bp)
ATACTGGTCACCTCCAATGGCAAGT
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--528--2951Chr03:10623819..10623843 (25 bp)
AATGGCAAGTCGCTGAACCCCCATC
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--928--10191Chr03:10623856..10623880 (25 bp)
TATATCGCGCCGTGCTGTCTCGTGT
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--166--7431Chr03:10623877..10623897 (21 bp)
GTGTTCTAGACGCTGCCATGGCGAA
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--1119--8471Chr03:10624105..10624129 (25 bp)
TGGCTGGCCGCGAACGACGTCGTCA
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--1074--2171Chr03:10624192..10624216 (25 bp)
ACACTGACTAGCCTGCGCAAAGAGA
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--869--3331Chr03:10624193..10624217 (25 bp)
CACTGACTAGCCTGCGCAAAGAGAT
LOC_Os03g18990
OsAffx.25136.1.S1_x_at--799--1971Chr03:10624194..10624218 (25 bp)
ACTGACTAGCCTGCGCAAAGAGATG
LOC_Os03g18990
Target Sequence 
GTTGTGGATGGCGACAGCTTCATCGACGCAGCGGGGAGGAGATGCTCAAGGCATTCATGCCCGTCGCCGTCTACTCCCTC
ATCGTCTCCTTCCACACCGACTCCTTCCGCCGCGCCTCCATGCTCAACATGCTCGGCATCTCCGCGGGCGTCGCCGTCGC
CGTCGCCGCCTACGGCGAGGCGCGGTTCGACGCGTTCGGCGTCATGCTACAGCTCACCGCCGTCGCCGCCGAGGCCACGT
GGCTCGTGCTCATCCAGATACTGGTCACCTCCAATGGCAAGTCGCTGAACCCCCATCACCTCGCTCTACTATATCGCGCC
GTGCTGTCTCGTGTTCTAGACGCTGCCATGGCGAAGGCGGCGCCGCCGTGGCTGGCCGCGAACGACGTCGTCACCGCTGT
CACCGCCGCCGGCCGCCGGCTGCCGACACCCTCCTCTCTCGTCGGCCTCCTCCCCACACTGACTAGCCTGCGCAAAGAGA
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25136.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis