Browse Element(s) Details


Os.49654.1.S1_at

Description gb:AK101878.1
DB_XREF= gi:32987087
TID=Os.49654.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.49654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070J12, full insert sequence.
FL= gb:AK102523.1 gb:AK106531.1 gb:AK101878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1897011/11protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18910Os.49999.1.S1_x_at11/113+10578122..10580561COBRA-like protein 7 precursor, putative, expressed
LOC_Os03g18930OsAffx.12930.1.S1_at11/113+10584007..10584580hypothetical protein
LOC_Os03g18940Os.49715.1.S1_at11/113+10585919..10591295exonuclease family protein, expressed
LOC_Os03g18950OsAffx.3272.1.S1_at10/113+10592566..10594614Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os03g18960OsAffx.3273.1.S1_at11/113+10596815..10599556calmodulin-binding protein, putative, expressed
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed
LOC_Os03g18990OsAffx.25136.1.S1_x_at11/113+10622599..10624308hypothetical protein
LOC_Os03g18990OsAffx.19217.1.S1_x_at1/113+10622599..10624308hypothetical protein
LOC_Os03g19000OsAffx.12931.1.S1_at11/113+10624831..10625595Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_s_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49654.1.S1_at--248--7671Chr03:10601234..10601258 (25 bp)
GGGTTGGCCCTTATCTTTGTTCAGA
LOC_Os03g18970
Os.49654.1.S1_at--1134--1271Chr03:10601175..10601199 (25 bp)
AGATCTAGTCGCTCAACAGCGTGCA
LOC_Os03g18970
Os.49654.1.S1_at--1020--1951Chr03:10601128..10601152 (25 bp)
ACTGGTCCTTGTTCGTGCAAACTGG
LOC_Os03g18970
Os.49654.1.S1_at--85--7351Chr03:10601114..10601138 (25 bp)
GTGCAAACTGGTCTCCTGGTTCGGT
LOC_Os03g18970
Os.49654.1.S1_at--746--2551Chr03:10601021..10601045 (25 bp)
AACTGCAATCTAGCCTGAACTGAAC
LOC_Os03g18970
Os.49654.1.S1_at--431--10851Chr03:10600976..10601000 (25 bp)
TTGGGAGTCTATCAACAGCGCAGAT
LOC_Os03g18970
Os.49654.1.S1_at--929--6851Chr03:10600941..10600965 (25 bp)
GTTTGCACTGGGAAGATAGCTCACA
LOC_Os03g18970
Os.49654.1.S1_at--139--9691Chr03:10600921..10600945 (25 bp)
TCACAGGATTTCAACCCCGTAGTTT
LOC_Os03g18970
Os.49654.1.S1_at--127--2951Chr03:10600823..10600847 (25 bp)
AAGGCTCCTTGTTCTACCTTGGAAT
LOC_Os03g18970
Os.49654.1.S1_at--1065--10111Chr03:10600795..10600819 (25 bp)
TATGCTTGTGGAGCCGAACAGACTA
LOC_Os03g18970
Os.49654.1.S1_at--323--9731Chr03:10600745..10600769 (25 bp)
TCAATGGTAATGTCTTTCGGTGTTC
LOC_Os03g18970
Target Sequence 
GGGTTGGCCCTTATCTTTGTTCAGATTGTAGGAAAAAGAAGGATGCAATGGAAGGTAAAAGATCTAGTCGCTCAACAGCG
TGCAGGTGAAATTGCCAATAGGACTAACTGGTCCTTGTTCGTGCAAACTGGTCTCCTGGTTCGGTTGTCTGCCACATGTA
AAAAGAGGATAATAATCTGTTTGCTGCTGGATCCAAGTATTATTGGTGAAACTAACTGCAATCTAGCCTGAACTGAACAA
ATTGGGCTACTAACAATCTTGGGAGTCTATCAACAGCGCAGATGAAAATTTCTGTTTGCACTGGGAAGATAGCTCACAGG
ATTTCAACCCCGTAGTTTTTTTTTTTTTTTTTTTGAACCTTAGTATGTAAAGTGAAATGTCTAGCTTAACAATGTTTGTA
AGAGATGGCAATTGGCAAGGCTCCTTGTTCTACCTTGGAATGTATATGCTTGTGGAGCCGAACAGACTAATTTATTTATC
TCATGCTATCCTAATCAATGGTAATGTCTTTCGGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis