Browse Element(s) Details


Os.49715.1.S1_at

Description gb:AK101988.1
DB_XREF= gi:32987197
TID=Os.49715.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079C02, full insert sequence.
FL= gb:AK101988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1894011/11exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed
LOC_Os03g18900NANA3+10570513..10571225expressed protein
LOC_Os03g18910Os.49999.1.S1_x_at11/113+10578122..10580561COBRA-like protein 7 precursor, putative, expressed
LOC_Os03g18930OsAffx.12930.1.S1_at11/113+10584007..10584580hypothetical protein
LOC_Os03g18940Os.49715.1.S1_at11/113+10585919..10591295exonuclease family protein, expressed
LOC_Os03g18950OsAffx.3272.1.S1_at10/113+10592566..10594614Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os03g18960OsAffx.3273.1.S1_at11/113+10596815..10599556calmodulin-binding protein, putative, expressed
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49715.1.S1_at--1157--5931Chr03:10590837..10590861 (25 bp)
GAGCACTACAAGATCCCATTGGCAG
LOC_Os03g18940
Os.49715.1.S1_at--945--991Chr03:10590883..10590907 (25 bp)
AGGATGTGATCACCCTCTGCTATGT
LOC_Os03g18940
Os.49715.1.S1_at--133--5351Chr03:10590914..10590938 (25 bp)
GAAGTTGACCTTCGAGCTGAAACTA
LOC_Os03g18940
Os.49715.1.S1_at--252--9811Chr03:10590937..10590961 (25 bp)
TAACTGTTCCTCAGCTCCTTGAGAG
LOC_Os03g18940
Os.49715.1.S1_at--321--8851Chr03:10590956..10590980 (25 bp)
TGAGAGGTCATTCCGGGTTTCCGAT
LOC_Os03g18940
Os.49715.1.S1_at--964--5511Chr03:10591000..10591024 (25 bp)
GAAAATGACTGCAGTTGCCTCGCCG
LOC_Os03g18940
Os.49715.1.S1_at--548--10551Chr03:10591052..10591076 (25 bp)
TTCATTGTCCTTGTATCCAGTGCTG
LOC_Os03g18940
Os.49715.1.S1_at--537--6831Chr03:10591079..10591103 (25 bp)
GTTTCAGATCCCAGCTCATATGTTA
LOC_Os03g18940
Os.49715.1.S1_at--565--2931Chr03:10591119..10591143 (25 bp)
AAGGCAGGCCTGATCGTTACCGTGA
LOC_Os03g18940
Os.49715.1.S1_at--729--9911Chr03:10591165..10591189 (25 bp)
TACTGATACTTGTTGCCCCTTGAAA
LOC_Os03g18940
Os.49715.1.S1_at--169--8971Chr03:10591261..10591285 (25 bp)
TGAAACGTTCTTGACTATCTGTAGT
LOC_Os03g18940
Target Sequence 
GAGCACTACAAGATCCCATTGGCAGGGAGCGCTCATCGAGCAATGCAGGATGTGATCACCCTCTGCTATGTTCTCCAGAA
GTTGACCTTCGAGCTGAAACTAACTGTTCCTCAGCTCCTTGAGAGGTCATTCCGGGTTTCCGATCTTTCAATCCCTCGCC
CTGGAAAATGACTGCAGTTGCCTCGCCGAAAGGATCACACAGAAACCTGGATTGTTTCATTGTCCTTGTATCCAGTGCTG
TTGTTTCAGATCCCAGCTCATATGTTATTCCGACAACAGAATAAGGCAGGCCTGATCGTTACCGTGATATTAATCATTTT
TAGTTTAGTACTGATACTTGTTGCCCCTTGAAACATTGATTAGACGTACATTTATTCAAAGTTGTAAAGACCAAAACATG
TCCTGGTTTCCAACCTGGAAGAAATGAAACGTTCTTGACTATCTGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis