Browse Element(s) Details


OsAffx.25137.1.S1_s_at

Description tigr:9631.m01877
TID=OsAffx.25137.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxisomal biogenesis factor 11 (PEX11)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1901011/11Peroxisomal biogenesis factor 11 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18970Os.49654.1.S1_at11/113+10600735..10604430protein phosphatase 2C, putative, expressed
LOC_Os03g18980Os.54684.1.S1_at7/113+10609092..10614810Kinesin-4, putative, expressed
LOC_Os03g18990OsAffx.25136.1.S1_x_at11/113+10622599..10624308hypothetical protein
LOC_Os03g18990OsAffx.19217.1.S1_x_at1/113+10622599..10624308hypothetical protein
LOC_Os03g19000OsAffx.12931.1.S1_at11/113+10624831..10625595Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_s_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19010OsAffx.25137.1.S1_at11/113+10626805..10627610Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os03g19020Os.8914.1.S1_at11/113+10630243..10634687PHD-finger family protein, expressed
LOC_Os03g19030OsAffx.15200.2.S1_x_at5/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.2.S1_at3/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.3.S1_s_at1/113+10640221..10640985hypothetical protein
LOC_Os03g19040Os.54627.1.S1_at11/113+10641421..10642485expressed protein
LOC_Os03g19050Os.35344.18.S1_x_at10/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050Os.35344.3.S1_x_at9/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_at5/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_x_at4/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19060NANA3+10652230..10655534hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016559biological_processperoxisome fission
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25137.1.S1_s_at--674--4231Chr03:10627235..10627259 (25 bp)
CCGAGCTGCTGGGATACGTTGGTTC
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--1112--9111Chr03:10627241..10627265 (25 bp)
TGCTGGGATACGTTGGTTCCATCAC
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--37--7951Chr03:10627246..10627270 (25 bp)
GGATACGTTGGTTCCATCACGATTA
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--1015--6611Chr03:10627252..10627276 (25 bp)
GTTGGTTCCATCACGATTAAGCTGG
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--858--491Chr03:10627282..10627306 (25 bp)
ATCGGCAAACTGGAGTCTTCCGTCA
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--808--8231Chr03:10627285..10627309 (25 bp)
GGCAAACTGGAGTCTTCCGTCAAGA
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--344--2391Chr03:10627288..10627312 (25 bp)
AAACTGGAGTCTTCCGTCAAGATGC
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--680--8551Chr03:10627292..10627316 (25 bp)
TGGAGTCTTCCGTCAAGATGCGGCT
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--282--791Chr03:10627343..10627367 (25 bp)
ATGTGGTGAGGACGCTACGGGTGAA
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--19--9931Chr03:10627487..10627511 (25 bp)
TACTGTCCGCGTTGATCAGCGCTCA
LOC_Os03g19010
OsAffx.25137.1.S1_s_at--873--1471Chr03:10627514..10627538 (25 bp)
AGAATTGGAATTCGTGCTGAAGCCC
LOC_Os03g19010
Target Sequence 
CCGAGCTGCTGGGATACGTTGGTTCCATCACGATTAAGCTGGAAGAGATCGGCAAACTGGAGTCTTCCGTCAAGATGCGG
CTGAAGGAAGGTTGCAGGGAGGAGAGCGATGTGGTGAGGACGCTACGGGTGAAGCTGCTGCTCAAGCGGATGTCCGTTGT
GCAGGACGTTGCGGACGCCGTGATGGCGCTAGGGGACGTGACCGACGGGAAGGGTTTGCTCGGCAGCTCGACGCTCATGG
CGTCCGCCGGCTTACTGTCCGCGTTGATCAGCGCTCACAAGAATTGGAATTCGTGCTGAAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25137.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis