Browse Element(s) Details


Os.5615.1.S1_at

Description gb:AK066250.1
DB_XREF= gi:32976268
TID=Os.5615.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-302-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056D15, full insert sequence.
FL= gb:AK069897.1 gb:AK059801.1 gb:AK066250.1 gb:AK104186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1887010/11DnaJ, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18820Os.16827.2.S1_at11/113+10526060..10528045Glycosyltransferase 5, putative, expressed
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18870Os.5615.1.S1_at10/113+10550725..10552300DnaJ, putative, expressed
LOC_Os03g18880Os.53278.1.S1_at11/113+10554429..10555731retrotransposon protein, putative, unclassified, expressed
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed
LOC_Os03g18900NANA3+10570513..10571225expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5615.1.S1_at--303--8971Chr03:10551271..10551421 (25 bp)
TGAAAAACGAGAAGCCGGACACACT
LOC_Os03g18870
Os.5615.1.S1_at--616--3951Chr03:10551256..10551280 (25 bp)
CGGACACACTCGAGGACCTGCAGAA
LOC_Os03g18870
Os.5615.1.S1_at--553--9111Chr03:10551229..10551253 (25 bp)
TGCTGCAAGACATCGTCAGCGGCGA
LOC_Os03g18870
Os.5615.1.S1_at--219--9151Chr03:10550888..10550912 (25 bp)
TGCGTGCGTGGCCAAAGATTCCAAT
LOC_Os03g18870
Os.5615.1.S1_at--176--6591Chr03:10550872..10550896 (25 bp)
GATTCCAATATCTTGTCGACATTTC
LOC_Os03g18870
Os.5615.1.S1_at--619--3111Chr03:10550866..10550890 (25 bp)
AATATCTTGTCGACATTTCGTCCTG
LOC_Os03g18870
Os.5615.1.S1_at--939--8711Chr03:10550859..10550883 (25 bp)
TGTCGACATTTCGTCCTGAATTTCA
LOC_Os03g18870
Os.5615.1.S1_at--447--6871Chr03:10550760..10550784 (25 bp)
GTATTCCCAATTTGTTACACTACTG
LOC_Os03g18870
Os.5615.1.S1_at--488--6771Chr03:10550747..10550771 (25 bp)
GTTACACTACTGGTGCTACTATTGA
LOC_Os03g18870
Os.5615.1.S1_at--158--3911Chr03:10550738..10550762 (25 bp)
CTGGTGCTACTATTGATGTGTCTCT
LOC_Os03g18870
Os.5615.1.S1_at--865--8871Chr03:10550725..10550749 (25 bp)
TGATGTGTCTCTAGTGATCTCTGCC
NONE
Target Sequence 
TGAAAAACGAGAAGCCGGACACACTCGAGGACCTGCAGAAGATGCTGCAAGACATCGTCAGCGGCGACGGCGGAAGCCGC
GGCGGCGGCGTCGGTGGCCGCGTGCCGTCGGACGGCACACGGAGGACGCGCGTCGCGCCCTACCCGGCGCAGTCGCGCAG
GTGACCGGCGCGCCGGTGTACGAGACGTGCACACGCCTCTAAGTGATGAAAAGAGAGACAAGCAGAAGAAGAGAGGAAGC
AAACGGGAAAGAAAAACCAATAAAATTTGGCAGAATTTGTTTCCCTTTTTTTTAGGTCATCAGATGATTGACTCCGTTTA
GTTCGCTGGGTTGGGTTGGGTCGGGTGTGCCGTTCGATTCCGGCCGCGTCACCCAAGAATTGGTGCGTGCGTGGCCAAAG
ATTCCAATATCTTGTCGACATTTCGTCCTGAATTTCACTCTCTTGTTGATGTGTTCATCATGCGTCCTCTTCTGCCTTCC
TGTGTCATTGTCCCTGTCCTACTCCCACAGTGTATTCCCAATTTGTTACACTACTGGTGCTACTATTGATGTGTCTCTAG
TGATCTCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis