Browse Element(s) Details


Os.11313.1.S1_at

Description gb:AF395880.1
DB_XREF= gi:18539470
TID=Os.11313.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11313 (NCBI UniGene Cluster)
DEF=Oryza sativa JIOsPR10 mRNA, complete cds.
PROD=JIOsPR10
FL= gb:AF395880.1 gb:AK121376.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1885011/11Pathogenesis-related protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18810Os.4665.1.S1_at11/113+10521895..10525292Aspartate aminotransferase, putative, expressed
LOC_Os03g18820Os.16827.2.S1_at11/113+10526060..10528045Glycosyltransferase 5, putative, expressed
LOC_Os03g18830Os.54126.1.S1_at10/113+10530966..10535157Programmed cell death protein 2, C-terminal domain containing protein, expressed
LOC_Os03g18840Os.53751.1.S1_at11/113+10535279..10540747transducin family protein, putative, expressed
LOC_Os03g18850Os.11313.1.S1_at11/113+10541262..10542310Pathogenesis-related protein 1, putative, expressed
LOC_Os03g18860Os.53030.1.S1_at11/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18860OsAffx.23254.1.S1_x_at1/113+10543741..10545824Pectinesterase family protein, expressed
LOC_Os03g18870Os.5615.1.S1_at10/113+10550725..10552300DnaJ, putative, expressed
LOC_Os03g18880Os.53278.1.S1_at11/113+10554429..10555731retrotransposon protein, putative, unclassified, expressed
LOC_Os03g18890Os.27465.1.S1_at11/113+10563011..10565056glycosyl transferase family 8 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11313.1.S1_at--669--1691Chr03:10541708..10541732 (25 bp)
AGCCATGCCATTCAGCCACATGAAG
LOC_Os03g18850
Os.11313.1.S1_at--275--2231Chr03:10541758..10541782 (25 bp)
ACAAGTGCGAGTGCAAGTCGACGCT
LOC_Os03g18850
Os.11313.1.S1_at--960--4591Chr03:10541820..10541844 (25 bp)
GCGACGTCGCACATCAAGGTGGAGC
LOC_Os03g18850
Os.11313.1.S1_at--386--4311Chr03:10541926..10541950 (25 bp)
CCAAGGCTAAGGAGTCCCTCACCGG
LOC_Os03g18850
Os.11313.1.S1_at--649--2011Chr03:10542001..10542025 (25 bp)
ACTAAATCGTCATCATGCCTATGCC
LOC_Os03g18850
Os.11313.1.S1_at--735--231Chr03:10542044..10542068 (25 bp)
ATATTTGATCTTTGCGAGTGTGTAT
LOC_Os03g18850
Os.11313.1.S1_at--498--6671Chr03:10542137..10542161 (25 bp)
GTTGCTGTCGGAGAATGGTTTTGTT
LOC_Os03g18850
Os.11313.1.S1_at--1082--2091Chr03:10542164..10542188 (25 bp)
ACATGATGCTGTCAACACCGGCTAT
LOC_Os03g18850
Os.11313.1.S1_at--361--3371Chr03:10542179..10542203 (25 bp)
CACCGGCTATGTTATGTATCTATCT
LOC_Os03g18850
Os.11313.1.S1_at--136--6911Chr03:10542194..10542218 (25 bp)
GTATCTATCTAGCATCTACCTGTTG
LOC_Os03g18850
Os.11313.1.S1_at--78--3731Chr03:10542209..10542233 (25 bp)
CTACCTGTTGGTTTTGCGTGGGAAT
LOC_Os03g18850
Target Sequence 
AGCCATGCCATTCAGCCACATGAAGGAGAGGCTGGAGTTCCTGGACGTGGACAAGTGCGAGTGCAAGTCGACGCTGGTGG
AGGGCGGCGGCATCGGCAAGGCGATCGAGACGGCGACGTCGCACATCAAGGTGGAGCCGGCGGCGAACGGCGGGAGCGTC
GTGAAGGTGGAGTCCACGTACAAGCTCCTCCCCGGAGTGGAGGTGAAGGACGAGATCACCAAGGCTAAGGAGTCCCTCAC
CGGCATCTTCAAGACCGCCGAGGCCTACCTCATCGCCAACCCGGACGCTTACAACTAAATCGTCATCATGCCTATGCCCC
CAAAATATGTTTGATAATATTTGATCTTTGCGAGTGTGTATGATCGAAATAAAGCTGCTTCCAAGCAGTGATTGAGAAGT
GAGCAGCGAGAAGCTTGGTGTGTGGTTTGGTTGCTGTCGGAGAATGGTTTTGTTTGACATGATGCTGTCAACACCGGCTA
TGTTATGTATCTATCTAGCATCTACCTGTTGGTTTTGCGTGGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis