Browse Element(s) Details


Os.51947.1.S1_at

Description gb:AK064371.1
DB_XREF= gi:32974389
TID=Os.51947.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C12, full insert sequence.
FL= gb:AK064371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0590011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05849NANA10+2940979..2941180NA
LOC_Os10g05860Os.21524.2.S1_x_at9/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05860Os.46085.1.S1_x_at5/1110+2943328..2944104proline-rich protein, putative
LOC_Os10g05870OsAffx.20939.1.S1_at3/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.10222.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.45902.1.A1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.56372.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870Os.50889.1.S1_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05870OsAffx.8356.1.S1_x_at1/1110+2946019..2950247hypothetical protein
LOC_Os10g05880Os.21524.2.S1_x_at5/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05880Os.46085.1.S1_x_at2/1110+2951068..2951869proline-rich protein, putative
LOC_Os10g05890Os.48033.1.S1_at10/1110+2954960..2956626hypothetical protein
LOC_Os10g05890Os.52296.1.S1_at1/1110+2954960..2956626hypothetical protein
LOC_Os10g05900Os.51947.1.S1_at11/1110+2962570..2965653expressed protein
LOC_Os10g05900Os.49942.1.S1_at5/1110+2962570..2965653expressed protein
LOC_Os10g05910Os.46085.1.S1_x_at2/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05910Os.21524.2.S1_x_at1/1110+2965911..2966719proline-rich protein, putative, expressed
LOC_Os10g05930Os.46085.1.S1_x_at11/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05930Os.21524.2.S1_x_at3/1110+2975065..2976037proline-rich protein, putative, expressed
LOC_Os10g05940OsAffx.20746.1.S1_at11/1110+2979518..2980873expressed protein
LOC_Os10g05950Os.8638.1.S1_s_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05950Os.8638.1.S1_at11/1110+2983492..2985384proline-rich protein, putative, expressed
LOC_Os10g05960OsAffx.18150.1.S1_at11/1110+2987757..2988335hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51947.1.S1_at--992--9631Chr10:2964171..2964193 (23 bp)
TCAGGACAGATCGTCTTTCTCGTGC
LOC_Os10g05900
Os.51947.1.S1_at--1126--2611Chr10:2964231..2964255 (25 bp)
AACCGTGCAAGTTTGGATCCTCTCG
LOC_Os10g05900
Os.51947.1.S1_at--585--6371Chr10:2964246..2964270 (25 bp)
GATCCTCTCGATGGCGGAGGACGTC
LOC_Os10g05900
Os.51947.1.S1_at--749--4232Chr10:2964301..2964439 (25 bp)
CCGAGTGCGTAGGTGCTGTTTGTTC
LOC_Os10g05900
Os.51947.1.S1_at--142--10791Chr10:2964434..2964458 (25 bp)
TTGTTCCTTTCGTGTGTGATTATGC
LOC_Os10g05900
Os.51947.1.S1_at--660--6551Chr10:2964451..2964475 (25 bp)
GATTATGCGTTGGATTGTCTTCTAC
LOC_Os10g05900
Os.51947.1.S1_at--406--4871Chr10:2964489..2964508 (20 bp)
GCTAGGCTGAGAATCGCTGGCGAAT
LOC_Os10g05900
Os.51947.1.S1_at--194--4151Chr10:2965303..2965323 (21 bp)
CGCTGGCGAATACACTGTCTTCAAT
LOC_Os10g05900
Os.51947.1.S1_at--511--4911Chr10:2965329..2965353 (25 bp)
GCTTCTCCTGATATGCGTTCGATAG
LOC_Os10g05900
Os.51947.1.S1_at--522--6491Chr10:2965507..2965531 (25 bp)
GATACCATGAGCTATTGTTTGTGTT
LOC_Os10g05900
Os.51947.1.S1_at--90--5473Chr10:2965568..2965592 (25 bp)
GAACTCTATTCATGGCCAATTTTGG
LOC_Os10g05900
Target Sequence 
TCAGGACAGATCGTCTTTCTCGTGCCCAAATGCCGTCCTCGGTCTTGCTACGCAGCCCCTCCAACCGTGCAAGTTTGGAT
CCTCTCGATGGCGGAGGACGTCAGGCGGTGGGAGATGGATCTGCTCCCCCCGCCGAGTGCGTAGGTGCTGTTTGTTCCTT
TCGTGTGTGATTATGCGTTGGATTGTCTTCTACAACCGCAGGAGAAGCTAGGCTGAGAATCGCTGGCGAATACACTGTCT
TCAATATGGTGCTTCTCCTGATATGCGTTCGATAGAGAAGTTTATGTGGCTTCTTGAGGTGCTCTATAAGGAGGAAGGTG
ACCAGTGAGGAGCAGAAGTTGCTGAATGTTTCCAGGCGATGCATGTTTTGAAAAAATAGCACCTGTAGAACGTGCAGGTA
ATATTTGTATATGTGGTATAGAAAGTTAGATACCATGAGCTATTGTTTGTGTTTTGAAAAGTTTCACTCACAGTGATGAA
AATATTGCAGAACTCTATTCATGGCCAATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis