Browse Element(s) Details


Os.51960.1.S1_at

Description gb:AK064415.1
DB_XREF= gi:32974433
TID=Os.51960.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-A11, full insert sequence.
FL= gb:AK064415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g423542/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42290Os.54374.1.S1_at11/117+25307339..25309942expressed protein
LOC_Os07g42300Os.12835.2.S1_a_at9/117+25311858..25314982Elongation factor 1-beta, putative, expressed
LOC_Os07g42310OsAffx.16683.1.S1_at11/117+25318861..25321486Lung seven transmembrane receptor family protein, expressed
LOC_Os07g42330OsAffx.5608.1.S1_at11/117+25325306..25326152SPX domain containing protein, expressed
LOC_Os07g42340NANA7+25328412..25328666hypothetical protein
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51960.1.S1_at--179--8851Chr07:25335165..25335189 (25 bp)
TGATCTTTTCTCCTCTGTTGACACA
LOC_Os07g42354
Os.51960.1.S1_at--1088--1131Chr07:25335304..25335327 (24 bp)
AGTCCACCATTGACCCATGAAGAGG
LOC_Os07g42354
Os.51960.1.S1_at--602--7391Chr07:25337032..25337056 (25 bp)
GTGATGGAATGAAATCGCCCGTTCT
NONE
Os.51960.1.S1_at--1048--4531Chr07:25337048..25337072 (25 bp)
GCCCGTTCTGTGTAGCAGCAGCATT
NONE
Os.51960.1.S1_at--361--1511Chr07:25337064..25337088 (25 bp)
AGCAGCATTAGCAGTGAGCCAGATC
NONE
Os.51960.1.S1_at--541--5051Chr07:25337094..25337118 (25 bp)
GCAGCTCGGCCATTGCAAAAGCGAA
NONE
Os.51960.1.S1_at--720--7371Chr07:25337147..25337171 (25 bp)
GTGACTGCACAAAATTACCTTCTTT
NONE
Os.51960.1.S1_at--14--6431Chr07:25337189..25337213 (25 bp)
GATCTTGGAACAGCAACAGCCAGTT
NONE
Os.51960.1.S1_at--129--2171Chr07:25337204..25337228 (25 bp)
ACAGCCAGTTGTGTTACTTCCAGAC
NONE
Os.51960.1.S1_at--388--2051Chr07:25337219..25337243 (25 bp)
ACTTCCAGACATGGTTTAACGCTGT
NONE
Os.51960.1.S1_at--223--7871Chr07:25337231..25337255 (25 bp)
GGTTTAACGCTGTAATTCCTATACT
NONE
Target Sequence 
TGATCTTTTCTCCTCTGTTGACACATTAACTAAAAGTCCACCATTGACCCATGAAGAGGAAGATGATTTGGGTTAGACAA
ATATAAATGGGTATGACTATAAACAAAAAGTGTTCTTTCATTGGCGATGATTTCCTGATCAACACCATTGGACCAGCTGG
TAAAGAGAAGGTACTGGGCAATCTCTATGACGGCACACCAGTGATGATCTCGACTAGTCTATTGCTATTCTTCTACCTGA
TCATCCAACTGAGATGGCTGATGAAGAGAGGCGGCGGCGCTCCGGCAAGCCTCCCAAGATTGTCAAGCACCGGCATCCTC
GACTTATCGACGTGATGGAATGAAATCGCCCGTTCTGTGTAGCAGCAGCATTAGCAGTGAGCCAGATCGAGAAGCAGCTC
GGCCATTGCAAAAGCGAAGTAGGATTCCACGATGTGAAGCAGCTATGTGACTGCACAAAATTACCTTCTTTTTTTGAGTT
TGAGCAAAGATCTTGGAACAGCAACAGCCAGTTGTGTTACTTCCAGACATGGTTTAACGCTGTAATTCCTATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis