Browse Element(s) Details


Os.5197.2.S1_x_at

Description gb:NM_192454.1
DB_XREF= gi:34911991
GEN=P0694A04.29
TID=Os.5197.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0694A04.29 (P0694A04.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0694A04.29 (P0694A04.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g469509/11Possible apospory-associated protein C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46900OsAffx.1319.1.S1_at4/111+27090406..27094000transposon protein, putative, Mariner sub-class
LOC_Os01g46910Os.31403.1.S1_at11/111+27094520..27096038expressed protein
LOC_Os01g46920OsAffx.2261.2.S1_at11/111+27099978..27101040hypothetical protein
LOC_Os01g46920OsAffx.2262.1.S1_x_at1/111+27099978..27101040hypothetical protein
LOC_Os01g46926Os.8873.1.S1_at11/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46926OsAffx.2262.1.S1_x_at9/111+27107908..27111201Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os01g46932Os.52748.1.S1_x_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.52748.1.S1_at11/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46932Os.37449.1.S1_x_at10/111+27112036..27115417Vacuolar protein sorting protein 25, putative, expressed
LOC_Os01g46940OsAffx.21436.1.S1_at11/111+27117124..27118517Sterol desaturase family protein, expressed
LOC_Os01g46950Os.5197.1.S1_a_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.1.S1_at11/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46950Os.5197.2.S1_x_at9/111+27118631..27122787Possible apospory-associated protein C, putative, expressed
LOC_Os01g46970Os.413.1.S1_at11/111+27126908..27132327bZIP transcription factor family protein, expressed
LOC_Os01g46980Os.9499.1.S1_at11/111+27138713..27143574Vacuolar ATP synthase subunit E, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5197.2.S1_x_at--710--10511NONE
TTCACCAGCAGCAAGGCTATCTTCA
NONE
Os.5197.2.S1_x_at--915--2671Chr01:27121145..27121169 (25 bp)
AAGCGATGCGAGGTGGAATTCCCAT
LOC_Os01g46950
Os.5197.2.S1_x_at--908--3151Chr01:27121132..27121153 (22 bp)
AATTCCCATATGCTTTCCACAGTTT
LOC_Os01g46950
Os.5197.2.S1_x_at--1037--6191Chr01:27120897..27120921 (25 bp)
GAGGCTCCACCACTAAATCATAATG
LOC_Os01g46950
Os.5197.2.S1_x_at--155--1831Chr01:27120866..27120890 (25 bp)
ACGGCAAAGTTTCTGTTGACCTTCT
LOC_Os01g46950
Os.5197.2.S1_x_at--202--6611Chr01:27120852..27120876 (25 bp)
GTTGACCTTCTGTTAAAGCCATCTG
LOC_Os01g46950
Os.5197.2.S1_x_at--884--6291Chr01:27120825..27120849 (25 bp)
GATGATCTCAAATGTTGGCCACACT
LOC_Os01g46950
Os.5197.2.S1_x_at--1084--2171Chr01:27120117..27120136 (20 bp)
ACACTGCTTTGAATTCCGTCTCAGA
LOC_Os01g46950
Os.5197.2.S1_x_at--836--3411Chr01:27120096..27120120 (25 bp)
CAGAGTTTCTCTTTCGACGGATGGA
LOC_Os01g46950
Os.5197.2.S1_x_at--1023--2631NONE
AAGCCATTCATTGTTTGGAACCCAT
NONE
Os.5197.2.S1_x_at--316--2371Chr01:27119024..27119048 (25 bp)
AAACGATGGCGGATTTTGGCGACGA
LOC_Os01g46950
Target Sequence 
TTCACCAGCAGCAAGGCTATCTTCAAGCCACCAAAAGCGATGCGAGGTGGAATTCCCATATGCTTTCCACAGTTTGGAAA
TTGTGGAACATTGGAGCAGCATGGATTTGCAAGGAACAGGCTATGGGCCATAGATGATGAGGCTCCACCACTAAATCATA
ATGATAACAACGGCAAAGTTTCTGTTGACCTTCTGTTAAAGCCATCTGAAGATGATCTCAAATGTTGGCCACACTGCTTT
GAATTCCGTCTCAGAGTTTCTCTTTCGACGGATGGAGATCTCTCGTTAGTATCACGAGTCAGGAATGTTAATGGGAAGCC
ATTCATTGTTTGGAACCCATGGGACAAGAAGTCGAAAACGATGGCGGATTTTGGCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5197.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis