Browse Element(s) Details


Os.52060.1.S1_at

Description gb:AK064642.1
DB_XREF= gi:32974660
TID=Os.52060.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52060 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B09, full insert sequence.
FL= gb:AK064642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2133011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21280OsAffx.24364.1.S1_at10/112+12630129..12633481expressed protein
LOC_Os02g21290OsAffx.12144.1.S1_at10/112+12634413..12635833hypothetical protein
LOC_Os02g21300OsAffx.2707.1.S1_at11/112+12645468..12647677transposon protein, putative, unclassified, expressed
LOC_Os02g21310OsAffx.24365.1.S1_x_at9/112+12650102..12651466expressed protein
LOC_Os02g21320OsAffx.24453.1.S1_x_at8/112+12652063..12654527hypothetical protein
LOC_Os02g21320OsAffx.24453.3.S1_x_at6/112+12652063..12654527hypothetical protein
LOC_Os02g21330Os.52060.1.S1_at11/112+12656328..12657274expressed protein
LOC_Os02g21340OsAffx.12146.1.S1_at11/112+12663831..12669649ABC-2 type transporter family protein, expressed
LOC_Os02g21350OsAffx.24366.1.S1_at11/112+12680130..12680576hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52060.1.S1_at--246--10131Chr02:12656817..12656841 (25 bp)
TATGCATGTACTTCCTGGTGCTCGC
LOC_Os02g21330
Os.52060.1.S1_at--874--811Chr02:12656776..12656800 (25 bp)
ATGGTCATCAGGTTCGTCTCAACGA
LOC_Os02g21330
Os.52060.1.S1_at--1093--10251Chr02:12656740..12656764 (25 bp)
TTTGATGCGCTTCAGGCTGGAGCAC
LOC_Os02g21330
Os.52060.1.S1_at--149--1511Chr02:12656705..12656729 (25 bp)
AGCAGCCGCCTCACTAGAAGAAGCT
LOC_Os02g21330
Os.52060.1.S1_at--181--9891Chr02:12656630..12656654 (25 bp)
TACTTCTCCGTCGATTTGTGCAACC
LOC_Os02g21330
Os.52060.1.S1_at--875--8091Chr02:12656544..12656568 (25 bp)
GGACCTGGCACCTGGCGATGGACTT
LOC_Os02g21330
Os.52060.1.S1_at--745--7671Chr02:12656519..12656543 (25 bp)
GGGTTTTTTCCATCGGCTAGAACAT
LOC_Os02g21330
Os.52060.1.S1_at--61--6251Chr02:12656489..12656513 (25 bp)
GATGGTCTCTGATCCAAAGATTCCA
LOC_Os02g21330
Os.52060.1.S1_at--118--1371Chr02:12656446..12656470 (25 bp)
AGAGCTCTGATCCAAAGATTCCAAG
LOC_Os02g21330
Os.52060.1.S1_at--427--3291Chr02:12656408..12656432 (25 bp)
CACAGAGCTGCACCTGTATCAGGAT
LOC_Os02g21330
Os.52060.1.S1_at--330--10411Chr02:12656379..12656403 (25 bp)
TTTTGTGGACACGTTCAGTAATCTG
LOC_Os02g21330
Target Sequence 
TATGCATGTACTTCCTGGTGCTCGCCCGCAACCTCGTGCTCATGGTCATCAGGTTCGTCTCAACGAGGGAGACGGCGTTT
GATGCGCTTCAGGCTGGAGCACGGCGACGGGCAGCAGCCGCCTCACTAGAAGAAGCTCGCAATCGGCGCCCCTGAGCGGC
CGGAGGATCTTCCTCAGACGAGGCTGCTACTTCTCCGTCGATTTGTGCAACCCCTGCCCGCTCCACATCTACTTCTGCGA
CGCCGCCGCGAGCTTCCATGGTGCTTGGTGCGGGGACCTGGCACCTGGCGATGGACTTGGGTTTTTTCCATCGGCTAGAA
CATGCATAGATGGTCTCTGATCCAAAGATTCCAAGTGATGAGAAAACTCACAGAGCTCTGATCCAAAGATTCCAAGTGAT
GAGAAAACTCACAGAGCTGCACCTGTATCAGGATATAATTTTGTGGACACGTTCAGTAATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis