Browse Element(s) Details


OsAffx.24365.1.S1_x_at

Description tigr:9630.m02034
TID=OsAffx.24365.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2122011/11hypothetical protein
LOC_Os02g212309/11F-box domain containing protein, expressed
LOC_Os02g213109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21190Os.24569.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51424.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190OsAffx.24360.1.S1_x_at10/112+12567316..12580766expressed protein
LOC_Os02g21190Os.8521.2.S1_x_at5/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51995.1.S1_x_at1/112+12567316..12580766expressed protein
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24365.1.S1_x_at--759--813Chr02:12595638..12595662 (25 bp)
ATGGTCGTCAGGTTCGTCTCCACGG
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--831--8593Chr02:12595639..12595663 (25 bp)
TGGTCGTCAGGTTCGTCTCCACGGA
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--153--7813Chr02:12595640..12595664 (25 bp)
GGTCGTCAGGTTCGTCTCCACGGAG
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--253--9413Chr02:12595642..12595666 (25 bp)
TCGTCAGGTTCGTCTCCACGGAGAA
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--338--3993Chr02:12595652..12595676 (25 bp)
CGTCTCCACGGAGAAGGCCACGGTG
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--731--9493Chr02:12595654..12595678 (25 bp)
TCTCCACGGAGAAGGCCACGGTGGC
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--1026--4353Chr02:12595657..12595681 (25 bp)
CCACGGAGAAGGCCACGGTGGCGTT
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--211--5693Chr02:12595965..12595989 (25 bp)
GACTCCTCGCCGTGGACTTGGTTCT
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--141--1993Chr02:12595966..12595990 (25 bp)
ACTCCTCGCCGTGGACTTGGTTCTA
LOC_Os02g21230
OsAffx.24365.1.S1_x_at--470--1771Chr02:12593543..12593567 (25 bp)
ACCTGATTGGAAATTGCTGTGCTAA
LOC_Os02g21220
OsAffx.24365.1.S1_x_at--916--4271Chr02:12593544..12593568 (25 bp)
CCTGATTGGAAATTGCTGTGCTAAA
LOC_Os02g21220
Target Sequence 
ATGGTCGTCAGGTTCGTCTCCACGGAGAAGGCCACGGTGGCGTTNGACGTCTTCAAGCTGGAGCTGNAGCCNCNGTCCTG
GAAGAAANTCACCTTGGACNCCNTCNCAGANCNGANGATCTTCCTCGNGCGAGGCTNCTCCNNNGNCGTCGAGATGAGGA
ANNCNNNCCNNTGCCNTCCCANCATCTACTTCCTGGATGACTCCGNGAGNNTTNANCGGNGCNGGGNNCTCGACCTCGCA
GGNGCAGCAGGTNNAGGGNCCGTTCCCCTGCGGCGACACNGGCAGATGCTGCGAGCAGGGNATNGTCCGCTGCCNNCCGC
GAGAGCCGCCATCNGACTCCTCGCCGTGGACTTGGTTCTANCTGCCCCNANACGNNNGCCNTTNNNCNTNANTGGTNTNN
GNNGCANNNANTCAAACAANNGGAANAGNTNNNNNNNNAGNNNNNNCNNNNTNNNNANGTGAACCTGATTGGAAATTGCT
GTGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24365.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis