Browse Element(s) Details


Os.24569.1.S1_at

Description gb:AK070114.1
DB_XREF= gi:32980138
TID=Os.24569.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040N15, full insert sequence.
FL= gb:AK070114.1 gb:AK065679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2119011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21120OsAffx.30280.1.S1_x_at1/112+12543431..12544137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21130OsAffx.31069.1.S1_x_at1/112+12545016..12548077retrotransposon protein, putative, unclassified
LOC_Os02g21140NANA2+12548724..12550304transposon protein, putative, unclassified
LOC_Os02g21150NANA2+12552651..12554960retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21160OsAffx.17830.2.S1_x_at1/112+12558782..12559030hypothetical protein
LOC_Os02g21170OsAffx.12142.1.S1_at11/112+12561046..12561513hypothetical protein
LOC_Os02g21180NANA2+12562844..12563373hypothetical protein
LOC_Os02g21190Os.24569.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51424.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190OsAffx.24360.1.S1_x_at10/112+12567316..12580766expressed protein
LOC_Os02g21190Os.8521.2.S1_x_at5/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51995.1.S1_x_at1/112+12567316..12580766expressed protein
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24569.1.S1_at--362--6571Chr02:12579345..12579369 (25 bp)
GATTCTCAAAGTCGTTCAGGTGCAG
LOC_Os02g21190
Os.24569.1.S1_at--222--2731Chr02:12579387..12579411 (25 bp)
AAGCAAGATACAGCTGCCATACATG
LOC_Os02g21190
Os.24569.1.S1_at--491--4431Chr02:12579402..12579426 (25 bp)
GCCATACATGGCTTGAGGGTTCAAC
LOC_Os02g21190
Os.24569.1.S1_at--1120--5991Chr02:12579416..12579440 (25 bp)
GAGGGTTCAACGCAGAGTCAAAGTT
LOC_Os02g21190
Os.24569.1.S1_at--982--3411Chr02:12579457..12579481 (25 bp)
CAGAAGCTATTCATGACAACGGATT
LOC_Os02g21190
Os.24569.1.S1_at--817--5611Chr02:12579471..12579495 (25 bp)
GACAACGGATTCATAGGTGCAAAGA
LOC_Os02g21190
Os.24569.1.S1_at--483--6571Chr02:12579497..12579521 (25 bp)
GATTCGGGCAATATTGTTACATAAA
LOC_Os02g21190
Os.24569.1.S1_at--314--10271Chr02:12579545..12579569 (25 bp)
TTTGCCAAACGGGTCCAACGACTGT
LOC_Os02g21190
Os.24569.1.S1_at--1038--1911Chr02:12579553..12579577 (25 bp)
ACGGGTCCAACGACTGTGTCAAAGA
LOC_Os02g21190
Os.24569.1.S1_at--780--5431Chr02:12579596..12579620 (25 bp)
GAACCTTGATCAATCATGTCTGTTA
LOC_Os02g21190
Os.24569.1.S1_at--690--6791Chr02:12579617..12579641 (25 bp)
GTTATTTTCAATCACAGCAGCTATA
LOC_Os02g21190
Target Sequence 
GATTCTCAAAGTCGTTCAGGTGCAGCAGCTAAACTGAAGCAAAAGCAAGATACAGCTGCCATACATGGCTTGAGGGTTCA
ACGCAGAGTCAAAGTTAAAAAAATATCAATATCAGAAGCTATTCATGACAACGGATTCATAGGTGCAAAGATGATTCGGG
CAATATTGTTACATAAATTTCTGTGGGTATATGTTAGTGGTTTGCCAAACGGGTCCAACGACTGTGTCAAAGAAGGGTAG
CATTATGACAAGAACCTTGATCAATCATGTCTGTTATTTTCAATCACAGCAGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis