Browse Element(s) Details


OsAffx.24361.1.S1_at

Description tigr:9630.m02032
TID=OsAffx.24361.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2120011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21160OsAffx.17830.2.S1_x_at1/112+12558782..12559030hypothetical protein
LOC_Os02g21170OsAffx.12142.1.S1_at11/112+12561046..12561513hypothetical protein
LOC_Os02g21180NANA2+12562844..12563373hypothetical protein
LOC_Os02g21190Os.24569.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51424.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190OsAffx.24360.1.S1_x_at10/112+12567316..12580766expressed protein
LOC_Os02g21190Os.8521.2.S1_x_at5/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51995.1.S1_x_at1/112+12567316..12580766expressed protein
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24361.1.S1_at--329--851Chr02:12583821..12583845 (25 bp)
ATGGAACAGAACCTTGACCCCAGCA
LOC_Os02g21200
OsAffx.24361.1.S1_at--1063--10731Chr02:12583808..12583832 (25 bp)
TTGACCCCAGCAGCGATGGCCAAGG
LOC_Os02g21200
OsAffx.24361.1.S1_at--1030--871Chr02:12583793..12583817 (25 bp)
ATGGCCAAGGAGTTTATCAGTTCAA
LOC_Os02g21200
OsAffx.24361.1.S1_at--344--6811Chr02:12583782..12583806 (25 bp)
GTTTATCAGTTCAAGACAGGTTTAG
LOC_Os02g21200
OsAffx.24361.1.S1_at--64--6831Chr02:12583719..12583787 (25 bp)
GTTTAGCTTCTGTAATCAAGTTCCA
LOC_Os02g21200
OsAffx.24361.1.S1_at--1073--2471Chr02:12583695..12583719 (25 bp)
AACAGAATGACATGCAAGTCCTCTG
LOC_Os02g21200
OsAffx.24361.1.S1_at--157--2771Chr02:12583659..12583683 (25 bp)
AAGAGTATAACAGTCGGCACCGGGT
LOC_Os02g21200
OsAffx.24361.1.S1_at--313--331Chr02:12583653..12583677 (25 bp)
ATAACAGTCGGCACCGGGTTGCTGA
LOC_Os02g21200
OsAffx.24361.1.S1_at--527--6211Chr02:12583610..12583634 (25 bp)
GAGGCTCCTGGAGTCGAGAACTTTC
LOC_Os02g21200
OsAffx.24361.1.S1_at--953--10531Chr02:12583588..12583612 (25 bp)
TTCAGTACAGAATATGCCCTCTCTT
LOC_Os02g21200
OsAffx.24361.1.S1_at--144--611Chr02:12583575..12583599 (25 bp)
ATGCCCTCTCTTTAATTGCTGTTAA
LOC_Os02g21200
Target Sequence 
ATGGAACAGAACCTTGACCCCAGCAGCGATGGCCAAGGAGTTTATCAGTTCAAGACAGGTTTAGCTTCTGTAATCAAGTT
CCAACAGAATGACATGCAAGTCCTCTGGAACTTCTATCAAGAGTATAACAGTCGGCACCGGGTTGCTGATATGCAACGTG
AGCAGGAGAGGCTCCTGGAGTCGAGAACTTTCAGTACAGAATATGCCCTCTCTTTAATTGCTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis