Browse Element(s) Details


Os.11645.1.S1_at

Description gb:AK071724.1
DB_XREF= gi:32981747
TID=Os.11645.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114H08, full insert sequence.
FL= gb:AK071724.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2124011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21190Os.24569.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51424.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190OsAffx.24360.1.S1_x_at10/112+12567316..12580766expressed protein
LOC_Os02g21190Os.8521.2.S1_x_at5/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51995.1.S1_x_at1/112+12567316..12580766expressed protein
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed
LOC_Os02g21270OsAffx.12143.1.S1_at10/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.24433.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.16331.1.S1_at1/112+12620368..12624393hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11645.1.S1_at--967--7571Chr02:12601087..12601111 (25 bp)
GGGCTGATGTCAATCCTTGACCACT
LOC_Os02g21240
Os.11645.1.S1_at--37--1511Chr02:12601059..12601083 (25 bp)
AGCACCTTGAATCCCTGGACATACG
LOC_Os02g21240
Os.11645.1.S1_at--655--5231Chr02:12600984..12601008 (25 bp)
GAATAAGTGATCTTAAGCTTCCTCA
LOC_Os02g21240
Os.11645.1.S1_at--584--10671Chr02:12600966..12600990 (25 bp)
TTCCTCATGACTCGATCTCTGATTT
LOC_Os02g21240
Os.11645.1.S1_at--645--9511Chr02:12600951..12600975 (25 bp)
TCTCTGATTTCAAGTACCGGGCTTA
LOC_Os02g21240
Os.11645.1.S1_at--112--6991Chr02:12600938..12600962 (25 bp)
GTACCGGGCTTACATTTTCAGCAGC
LOC_Os02g21240
Os.11645.1.S1_at--788--1131Chr02:12600913..12600937 (25 bp)
AGTGCCTTTTCTGGTTCTGATTTAG
LOC_Os02g21240
Os.11645.1.S1_at--365--3131Chr02:12600692..12600716 (25 bp)
AATTAGGTCTTCATATCAGCGGCAA
LOC_Os02g21240
Os.11645.1.S1_at--112--9651Chr02:12600677..12600701 (25 bp)
TCAGCGGCAATGTTTATCACTTAGC
LOC_Os02g21240
Os.11645.1.S1_at--1139--5031Chr02:12600648..12600672 (25 bp)
GCAGATCTGCTGGTGTTTATATTCA
LOC_Os02g21240
Os.11645.1.S1_at--592--3671Chr02:12600618..12600642 (25 bp)
CTTTTCTGGCCTCATTTTCCAAGAA
LOC_Os02g21240
Target Sequence 
GGGCTGATGTCAATCCTTGACCACTGCCAGCACCTTGAATCCCTGGACATACGCCAGTGCTACAGCATTCAAATGGATGA
TGCTCTGAAATCAAAGTGTTCTAGAATAAGTGATCTTAAGCTTCCTCATGACTCGATCTCTGATTTCAAGTACCGGGCTT
ACATTTTCAGCAGCAGTGCCTTTTCTGGTTCTGATTTAGAGCTTGATATGTATGATGATCTGCTGGATGTGGTCACTGAT
GATGATGATGCTGACTTTGATGATATGGATGATTATGATGATGGGGGCTCAGATGGTGGCATGTACGATGAATTTGATAT
CTGATGAGAATTACACTGTGCATGTGAAAATCGAGAGCTAGAACAGTTTGGTGCTTCTGTGTGTTGAGAATATGGAATTA
GGTCTTCATATCAGCGGCAATGTTTATCACTTAGCTACAGCAGATCTGCTGGTGTTTATATTCAGTGTTCTTTTCTGGCC
TCATTTTCCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis