Browse Element(s) Details


OsAffx.12143.1.S1_at

Description tigr:9630.m02039
TID=OsAffx.12143.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2127010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed
LOC_Os02g21270OsAffx.12143.1.S1_at10/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.24433.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.16331.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21280OsAffx.24364.1.S1_at10/112+12630129..12633481expressed protein
LOC_Os02g21290OsAffx.12144.1.S1_at10/112+12634413..12635833hypothetical protein
LOC_Os02g21300OsAffx.2707.1.S1_at11/112+12645468..12647677transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12143.1.S1_at--673--2611Chr02:12622395..12622415 (21 bp)
AACCCAGATTCATGTATACGACGAC
LOC_Os02g21270
OsAffx.12143.1.S1_at--1112--3111NONE
AATTTTGGGCGCAGAGGCCCCAGAT
NONE
OsAffx.12143.1.S1_at--1101--1271Chr02:12620737..12620761 (25 bp)
AGATCTGGTGATTGCCACCGCAACG
LOC_Os02g21270
OsAffx.12143.1.S1_at--224--4691Chr02:12620687..12620711 (25 bp)
GCGGAGACCCCAGATCCAGTGATTA
LOC_Os02g21270
OsAffx.12143.1.S1_at--36--6371Chr02:12620675..12620699 (25 bp)
GATCCAGTGATTACCGCTGCAAGGC
LOC_Os02g21270
OsAffx.12143.1.S1_at--298--9011Chr02:12620658..12620682 (25 bp)
TGCAAGGCCCTAGATCCGGACGAGA
LOC_Os02g21270
OsAffx.12143.1.S1_at--561--1191Chr02:12620622..12620646 (25 bp)
AGTAGATCCGGACGAGAGACTGACC
LOC_Os02g21270
OsAffx.12143.1.S1_at--407--5711Chr02:12620605..12620629 (25 bp)
GACTGACCGGAAGTATACCACCGTC
LOC_Os02g21270
OsAffx.12143.1.S1_at--446--3891Chr02:12620520..12620544 (25 bp)
CTGTGGCCGAGGTGCATGACCAGAT
LOC_Os02g21270
OsAffx.12143.1.S1_at--13--1731Chr02:12620502..12620526 (25 bp)
ACCAGATGCCGCCACGAGGTGAAGA
LOC_Os02g21270
OsAffx.12143.1.S1_at--331--851Chr02:12620414..12620438 (25 bp)
ATGGAAGGACCAGGCGATACGCTAG
LOC_Os02g21270
Target Sequence 
AACCCAGATTCATGTATACGACGACATCCAAATGGTGAAAAAGATAAAGGGAACAATATCAAAACACTATCTAGACATGC
AATTTTGGGCGCAGAGGCCCCAGATCTGGTGATTGCCACCGCAACGACGAAGCAGGAGAGGGCATCCAGCCGCGGAGACC
CCAGATCCAGTGATTACCGCTGCAAGGCCCTAGATCCGGACGAGAGGCTTGTCGGAAGTAGATCCGGACGAGAGACTGAC
CGGAAGTATACCACCGTCGCCGAGTCCAATCCGTGCCGCTGCCGAGGCCACTCCACCCCGTCGACTGCTCGAGCTGCGCT
GTGGCCGAGGTGCATGACCAGATGCCGCCACGAGGTGAAGATGGGGAGCCAGCAGGGAGAGAAAGAGCTTGGAGATGGGG
GGTTGGGGGACCAGCAGGCATGGCATGGAAGGACCAGGCGATACGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis