Browse Element(s) Details


OsAffx.16331.1.S1_at

Description tigr:9635.m01909
TID=OsAffx.16331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g212701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed
LOC_Os02g21270OsAffx.12143.1.S1_at10/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.24433.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.16331.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21280OsAffx.24364.1.S1_at10/112+12630129..12633481expressed protein
LOC_Os02g21290OsAffx.12144.1.S1_at10/112+12634413..12635833hypothetical protein
LOC_Os02g21300OsAffx.2707.1.S1_at11/112+12645468..12647677transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16331.1.S1_at--1023--10391Chr07:11217974..11217998 (25 bp)
TTTTGCAGATTCTTATCCCCGTAGA
NONE
OsAffx.16331.1.S1_at--281--6091Chr07:11217951..11217975 (25 bp)
GAGTACTGTGATACCTTCATTCTAA
NONE
OsAffx.16331.1.S1_at--742--6911Chr07:11217898..11217922 (25 bp)
GTATGTATTAGACCCGACTCCTATT
NONE
OsAffx.16331.1.S1_at--1114--1791Chr07:11217887..11217911 (25 bp)
ACCCGACTCCTATTGATCCAATTTA
NONE
OsAffx.16331.1.S1_at--764--5531Chr07:11217835..11217859 (25 bp)
GAAACAACTTTTATGCATTGCTGAA
NONE
OsAffx.16331.1.S1_at--824--2651Chr07:11217800..11217824 (25 bp)
AAGCCATGGCTAAAGTATGCCCTGG
NONE
OsAffx.16331.1.S1_at--296--10131Chr07:11217785..11217809 (25 bp)
TATGCCCTGGATCTAGGTGGAACGA
NONE
OsAffx.16331.1.S1_at--5--6172Chr07:11217762..11217786 (25 bp)
GAGGATATCAACCTATGGCGGCAAA
NONE
OsAffx.16331.1.S1_at--25--8351Chr07:11217747..11217771 (25 bp)
TGGCGGCAAATATTCCTTTCAAATG
NONE
OsAffx.16331.1.S1_at--498--4991Chr07:11217627..11217649 (23 bp)
GCAGGGAACTATCCGGTTATCTTGT
NONE
OsAffx.16331.1.S1_at--382--10171Chr07:11217610..11217634 (25 bp)
TATCTTGTTTCCCTTTTCATGCGCA
NONE
Target Sequence 
TTTTGCAGATTCTTATCCCCGTAGAGTACTGTGATACCTTCATTCTAATAGTGTTGGACCAAGATACGAGAACTCTGTAT
GTATTAGACCCGACTCCTATTGATCCAATTTACGAGAACAATCCAAACGCAAGATATGTGAAACAACTTTTATGCATTGC
TGAATACTTGGCAAAAGCCATGGCTAAAGTATGCCCTGGATCTAGGTGGAACGAGGATATCAACCTATGGCGGCAAATAT
TCCTTTCAAATGTTCCAATTCAGAGCAGGGAACTATCCGGTTATCTTGTTTCCCTTTTCATGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis