Browse Element(s) Details


Os.53595.1.S1_at

Description gb:AK073474.1
DB_XREF= gi:32983497
TID=Os.53595.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033045O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045O22, full insert sequence.
FL= gb:AK073474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2125011/11Clathrin adaptor complex small chain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed
LOC_Os02g21270OsAffx.12143.1.S1_at10/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.24433.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.16331.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21280OsAffx.24364.1.S1_at10/112+12630129..12633481expressed protein
LOC_Os02g21290OsAffx.12144.1.S1_at10/112+12634413..12635833hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53595.1.S1_at--704--10471Chr02:12610673..12610697 (25 bp)
TTACTCTGTAAGACGCTTGCATCTC
LOC_Os02g21250
Os.53595.1.S1_at--234--4931Chr02:12610687..12610711 (25 bp)
GCTTGCATCTCCTTGGATGTTCATT
LOC_Os02g21250
Os.53595.1.S1_at--319--6271Chr02:12610719..12610743 (25 bp)
GATGTGCTTTAAGTCTCACTCCAAA
LOC_Os02g21250
Os.53595.1.S1_at--624--11Chr02:12610786..12610810 (25 bp)
AATGGATCGGTCAGGTTAACCAAAT
LOC_Os02g21250
Os.53595.1.S1_at--234--2791Chr02:12610861..12610885 (25 bp)
AAGATCCCTTCCCTACTGAAAATAT
LOC_Os02g21250
Os.53595.1.S1_at--1127--231Chr02:12610939..12610963 (25 bp)
ATATAGACTACTCAGCCATGCTTGT
LOC_Os02g21250
Os.53595.1.S1_at--400--2171Chr02:12610976..12611000 (25 bp)
ACACCTAGCATTTACTCCCAAGGAT
LOC_Os02g21250
Os.53595.1.S1_at--129--6591Chr02:12611021..12611045 (25 bp)
GATTCCCTTTCCAAGCTTTCAAGGA
LOC_Os02g21250
Os.53595.1.S1_at--518--7871Chr02:12611081..12611105 (25 bp)
GGTTTGAAATCATCCAGCAGTCTGT
LOC_Os02g21250
Os.53595.1.S1_at--292--151Chr02:12611110..12611134 (25 bp)
ATTATGTTAGTTTGCTGTTGCTAGC
LOC_Os02g21250
Os.53595.1.S1_at--957--751Chr02:12611186..12611210 (25 bp)
ATGTCTCGATATATCCACTTTTCTG
LOC_Os02g21250
Target Sequence 
TTACTCTGTAAGACGCTTGCATCTCCTTGGATGTTCATTAGAACTGGATGTGCTTTAAGTCTCACTCCAAAACATTTTAG
TAGGAAACTCAAATTGTTTTATCCGTTGAATGTAATGGATCGGTCAGGTTAACCAAATGTAGTACAAGATACATGTCAGT
TTTCTGTCTTTCGACATAAACAGGAGGGAAGATCCCTTCCCTACTGAAAATATATTAATAAAAGGATGTATGTACAAGGG
AGAAGAAAGAATATACAAAGAGCAAAATATAGACTACTCAGCCATGCTTGTTAAAAAAAAAACACACCTAGCATTTACTC
CCAAGGATAACTAAAGCAAAATACCTTGGATTCCCTTTCCAAGCTTTCAAGGAAAGATATCCTTCATATAAAATGATACT
GTTTCAATGGTTTGAAATCATCCAGCAGTCTGTTATGATTATGTTAGTTTGCTGTTGCTAGCAACTCATTTTTATGGACA
AAAATCTTCATATTTATGCTCAATGTTATAATTATGTCTCGATATATCCACTTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis