Browse Element(s) Details


Os.54174.1.S1_at

Description gb:AK102355.1
DB_XREF= gi:32987564
TID=Os.54174.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091H09, full insert sequence.
FL= gb:AK102355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2126011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed
LOC_Os02g21270OsAffx.12143.1.S1_at10/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.24433.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.16331.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21280OsAffx.24364.1.S1_at10/112+12630129..12633481expressed protein
LOC_Os02g21290OsAffx.12144.1.S1_at10/112+12634413..12635833hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54174.1.S1_at--837--10731Chr02:12614572..12614596 (25 bp)
TTGACTTGCGTCAGTGCTTCAACGT
LOC_Os02g21260
Os.54174.1.S1_at--1113--971Chr02:12614506..12614530 (25 bp)
AGGATGTGAGGTTCCCAAACGACTC
LOC_Os02g21260
Os.54174.1.S1_at--881--3731Chr02:12614401..12614425 (25 bp)
CTCAATGGCCCTTCCATGGGAATGA
LOC_Os02g21260
Os.54174.1.S1_at--670--7371Chr02:12614272..12614296 (25 bp)
GTGACTACCATGTCCGCGGTCGGAT
LOC_Os02g21260
Os.54174.1.S1_at--894--7791Chr02:12614255..12614279 (25 bp)
GGTCGGATCATCCACCATGAGTAAC
LOC_Os02g21260
Os.54174.1.S1_at--506--7051Chr02:12614235..12614259 (25 bp)
GTAACTCGACATCTACATGCCGTAA
LOC_Os02g21260
Os.54174.1.S1_at--388--10011Chr02:12614209..12614233 (25 bp)
TAGCAGGTTTTGATGTCCCAGCGTC
LOC_Os02g21260
Os.54174.1.S1_at--891--10631Chr02:12614141..12614165 (25 bp)
TTCGCTGAGCGCTGTAAGTTATTTC
LOC_Os02g21260
Os.54174.1.S1_at--982--1431Chr02:12614080..12614104 (25 bp)
AGAACGGTTCTGTATCCAACTGCAA
LOC_Os02g21260
Os.54174.1.S1_at--899--9011Chr02:12614060..12614084 (25 bp)
TGCAAGTCTGCAACCGGTCTAGTGA
LOC_Os02g21260
Os.54174.1.S1_at--1071--3951Chr02:12614046..12614070 (25 bp)
CGGTCTAGTGACCTCATGTGTAGTG
LOC_Os02g21260
Target Sequence 
TTGACTTGCGTCAGTGCTTCAACGTCGATGTGGATGCAGAAGTGAGAGCAAAGTGTGCAAGGCTGAAGGATGTGAGGTTC
CCAAACGACTCAACCAAGGACTATGAGTATGAGACTTTTATTGAGACACCATCACTAGATTCGCTCCCACTTCCATTTCC
CGCAGCAGTTCCTCAATGGCCCTTCCATGGGAATGACGAGGATGACGACAATGATGGTGATCAGGACGATGACGATGATG
GTGATCAGGACGATGATGACTTGGGCGGTCACAGGGTGACAGAGTATGGTTTTATCATCGGTGACTACCATGTCCGCGGT
CGGATCATCCACCATGAGTAACTCGACATCTACATGCCGTAATTAGCAGGTTTTGATGTCCCAGCGTCTGAGTCTCAGGA
AATGGAAGGTAGGTGTTCAGAAGTAAGGTAATTCGCTGAGCGCTGTAAGTTATTTCTGTTGTAGTAGCTTACTACAACAG
AAGGGCGCATTTAGAACGGTTCTGTATCCAACTGCAAGTCTGCAACCGGTCTAGTGACCTCATGTGTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis