Browse Element(s) Details


Os.3436.1.S1_at

Description gb:AK061254.1
DB_XREF= gi:32971272
TID=Os.3436.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3436 (NCBI UniGene Cluster)
UG_TITLE=Copz2 mRNA for nonclathrin coat protein zeta2-COP, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A06, full insert sequence.
FL= gb:AK061254.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2125010/11Clathrin adaptor complex small chain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed
LOC_Os02g21270OsAffx.12143.1.S1_at10/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.24433.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21270OsAffx.16331.1.S1_at1/112+12620368..12624393hypothetical protein
LOC_Os02g21280OsAffx.24364.1.S1_at10/112+12630129..12633481expressed protein
LOC_Os02g21290OsAffx.12144.1.S1_at10/112+12634413..12635833hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3436.1.S1_at--340--7011Chr02:12611379..12611403 (25 bp)
GTACTACAGGGCTTCTCTGATTCTG
LOC_Os02g21250
Os.3436.1.S1_at--582--6571Chr02:12611397..12611420 (24 bp)
GATTCTGTTGGTCTTTTACTCAGGG
LOC_Os02g21250
Os.3436.1.S1_at--830--951Chr02:12611526..12611550 (25 bp)
AGGACTGCACTCGAGAATCTGGACT
LOC_Os02g21250
Os.3436.1.S1_at--699--6231NONE
GATGGCGGCATAATTCTGGAAACAG
NONE
Os.3436.1.S1_at--1130--1731Chr02:12612860..12612884 (25 bp)
ACCATTGCCGGGAAGGTTGCAACCA
LOC_Os02g21250
Os.3436.1.S1_at--968--1391Chr02:12612996..12613020 (25 bp)
AGACGATATCTCAGGCTTTAGCCAC
LOC_Os02g21250
Os.3436.1.S1_at--754--10331Chr02:12613012..12613036 (25 bp)
TTTAGCCACTGCTAGGGAGCACCTT
LOC_Os02g21250
Os.3436.1.S1_at--578--1071Chr02:12613025..12613049 (25 bp)
AGGGAGCACCTTGCAAGATCTCTGC
LOC_Os02g21250
Os.3436.1.S1_at--45--10271Chr02:12613069..12613093 (25 bp)
TTTGACTCCTTAAAACTTCTCTGCG
LOC_Os02g21250
Os.3436.1.S1_at--1066--3631Chr02:12613084..12613108 (25 bp)
CTTCTCTGCGTTGAGGATTGGGCGA
LOC_Os02g21250
Os.3436.1.S1_at--1007--31Chr02:12613100..12613124 (25 bp)
ATTGGGCGAGTGTACGTTGAAGCAT
LOC_Os02g21250
Target Sequence 
GTACTACAGGGCTTCTCTGATTCTGTTGGTCTTTTACTCAGGGGTGATGTTGAGAAGAGGACTGCACTCGAGAATCTGGA
CTTGATACTTNCTCTGCATCGATGAAATTGTAGATGGCGGCATAATTCTGGAAACAGATGCAAATACCATTGCCGGGAAG
GTTGCAACCAATGCTGTTGATGGTTCTGCCCCCTTCTCTGAGCAGACGATATCTCAGGCTTTAGCCACTGCTAGGGAGCA
CCTTGCAAGATCTCTGCTCAAGTAAATCATTTATCTTTTGACTCCTTAAAACTTCTCTGCGTTGAGGATTGGGCGAGTGT
ACGTTGAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis