Browse Element(s) Details


Os.24569.1.S2_at

Description gb:AK065679.1
DB_XREF= gi:32975697
TID=Os.24569.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023040N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035A08, full insert sequence.
FL= gb:AK070114.1 gb:AK065679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2121011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21170OsAffx.12142.1.S1_at11/112+12561046..12561513hypothetical protein
LOC_Os02g21180NANA2+12562844..12563373hypothetical protein
LOC_Os02g21190Os.24569.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51424.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190OsAffx.24360.1.S1_x_at10/112+12567316..12580766expressed protein
LOC_Os02g21190Os.8521.2.S1_x_at5/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51995.1.S1_x_at1/112+12567316..12580766expressed protein
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed
LOC_Os02g21250Os.53595.1.S1_at11/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21250Os.3436.1.S1_at10/112+12609067..12613255Clathrin adaptor complex small chain family protein, expressed
LOC_Os02g21260Os.54174.1.S1_at11/112+12614030..12618433F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24569.1.S2_at--12--5311Chr02:12588189..12588213 (25 bp)
GAAGGCACATCTACTTGGCACTGGG
LOC_Os02g21210
Os.24569.1.S2_at--1048--5011Chr02:12588214..12588238 (25 bp)
GCAGTGGTTGCTCTCATGTTTGCAA
LOC_Os02g21210
Os.24569.1.S2_at--957--6851Chr02:12588231..12588255 (25 bp)
GTTTGCAAGAGCCATATTTATCATC
LOC_Os02g21210
Os.24569.1.S2_at--465--9011Chr02:12588804..12588999 (25 bp)
TGAATCCTCAGACATGCCGGACCTT
LOC_Os02g21210
Os.24569.1.S2_at--70--591Chr02:12588988..12589012 (25 bp)
ATGCCGGACCTTGCTGGGAAAGCTG
LOC_Os02g21210
Os.24569.1.S2_at--470--5851Chr02:12589069..12589093 (25 bp)
GACCACGCTGCAGAATATTTTGAGG
LOC_Os02g21210
Os.24569.1.S2_at--1052--3071Chr02:12589103..12589127 (25 bp)
AATAGAGAACCCTCCAAGTGTGGAA
LOC_Os02g21210
Os.24569.1.S2_at--140--9891Chr02:12589153..12589177 (25 bp)
TACATTTATGCTGTAGGGCGATGCA
LOC_Os02g21210
Os.24569.1.S2_at--546--4631Chr02:12589170..12589194 (25 bp)
GCGATGCAGATGATGGCTTGTTCTT
LOC_Os02g21210
Os.24569.1.S2_at--630--8771Chr02:12589243..12589267 (25 bp)
TGTATTCTTTCTTTCACACCCGAAA
LOC_Os02g21210
Os.24569.1.S2_at--406--10451Chr02:12589255..12589279 (25 bp)
TTCACACCCGAAAGACCGTCTAATT
LOC_Os02g21210
Target Sequence 
GAAGGCACATCTACTTGGCACTGGGGCAGTGGTTGCTCTCATGTTTGCAAGAGCCATATTTATCATCCAATATTACCATG
GCTAAATAGTGATGGAAGCATTAATAGCACTGTCTATGAATGTTTAAGTCATCGGATTATTGGATATGTCATGCAGTATC
CTNGAATTANGGAGGAGGACGTTATCAATTGGTTGGATGTACTGAATCCTCAGACATGCCGGACCTTGCTGGGAAAGCTG
ACAATTGATAAACACCTTTATGTTCGGGTGTTTGATGAACCTGTGCCTACTGCTCCGACCACGCTGCAGAATATTTTGAG
GCAAGGCCACAATAGAGAACCCTCCAAGTGTGGAAGGCGNTACTTCGCTAATCCAATGAGTACATTTATGCTGTAGGGCG
ATGCAGATGATGGCTTGTTCTTTAGTTATTAGGGAGTAGTGTAATTAATTTAAGATTGTGTAATGTAACTTGTATTCTTT
CTTTCACACCCGAAAGACCGTCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24569.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis