Browse Element(s) Details


OsAffx.24360.1.S1_x_at

Description tigr:9630.m02031
TID=OsAffx.24360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2119010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21120OsAffx.30280.1.S1_x_at1/112+12543431..12544137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21130OsAffx.31069.1.S1_x_at1/112+12545016..12548077retrotransposon protein, putative, unclassified
LOC_Os02g21140NANA2+12548724..12550304transposon protein, putative, unclassified
LOC_Os02g21150NANA2+12552651..12554960retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21160OsAffx.17830.2.S1_x_at1/112+12558782..12559030hypothetical protein
LOC_Os02g21170OsAffx.12142.1.S1_at11/112+12561046..12561513hypothetical protein
LOC_Os02g21180NANA2+12562844..12563373hypothetical protein
LOC_Os02g21190Os.24569.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51424.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190OsAffx.24360.1.S1_x_at10/112+12567316..12580766expressed protein
LOC_Os02g21190Os.8521.2.S1_x_at5/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51995.1.S1_x_at1/112+12567316..12580766expressed protein
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein
LOC_Os02g21220OsAffx.24365.1.S1_x_at11/112+12591828..12593598hypothetical protein
LOC_Os02g21230OsAffx.24365.1.S1_x_at9/112+12594757..12596054F-box domain containing protein, expressed
LOC_Os02g21240Os.11645.1.S1_at11/112+12600510..12604147F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24360.1.S1_x_at--760--5171NONE
GCAAGAGGGTACTTCAGCTATAAAG
NONE
OsAffx.24360.1.S1_x_at--89--2291Chr02:12579646..12579670 (25 bp)
AAATGCCTCTTGAACTCTTTCTACA
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--197--8671Chr02:12579674..12579698 (25 bp)
TGTGGGATCAGCAAAGGTTCATACC
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--940--2431Chr02:12579725..12579749 (25 bp)
AACACTTTCAGAGATTCCTACCGAC
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--491--831Chr02:12579765..12579789 (25 bp)
ATGGATACTCATGCCAAGGGCCGAC
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--930--5711Chr02:12579787..12579811 (25 bp)
GACTCTCGCGCCTAATAAATATTTT
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--284--1311Chr02:12580212..12580236 (25 bp)
AGATGATTTGCCTACTCATTCGCTG
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--62--8091Chr02:12580236..12580260 (25 bp)
GGAGCTCAGGCCTTACATCGAAGAA
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--106--7971Chr02:12580271..12580295 (25 bp)
GGATCATTCTGTCATCACACGTTAA
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--903--5251Chr02:12580345..12580369 (25 bp)
GAATCTGTCGATACTTACTGGGAAA
LOC_Os02g21190
OsAffx.24360.1.S1_x_at--522--10871Chr02:12580399..12580423 (25 bp)
TTGGCTGAGACAAGTGCCTTCCCTG
LOC_Os02g21190
Target Sequence 
GCAAGAGGGTACTTCAGCTATAAAGAAAATGCCTCTTGAACTCTTTCTACAAGTTGTGGGATCAGCAAAGGTTCATACCT
TGATAAAAAAGTGTTCTCTTGGAAAAACACTTTCAGAGATTCCTACCGACATATACAATCAGCTCATGGATACTCATGCC
AAGGGCCGACTCTCGCGCCTAATAAATATTTTAGATAAACTCAAGTTGATCGGACTTCTAAATGGATACATAGAGGATTC
TAATGTGCAACCAGATGATTTGCCTACTCATTCGCTGGAGCTCAGGCCTTACATCGAAGAACCTACTCCAAGGATCATTC
TGTCATCACACGTTAATGGAAACCATTGTCCAAAATTTCGACATGATTTTCAGCTTTCAAAGCTGGAATCTGTCGATACT
TACTGGGAAACATTAAAGTACAGTTATGTAACAGCAGGCTTGGCTGAGACAAGTGCCTTCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24360.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis