Browse Element(s) Details


OsAffx.12142.1.S1_at

Description tigr:9630.m02029
TID=OsAffx.12142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2117011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21120OsAffx.30280.1.S1_x_at1/112+12543431..12544137retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21130OsAffx.31069.1.S1_x_at1/112+12545016..12548077retrotransposon protein, putative, unclassified
LOC_Os02g21140NANA2+12548724..12550304transposon protein, putative, unclassified
LOC_Os02g21150NANA2+12552651..12554960retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21160OsAffx.17830.2.S1_x_at1/112+12558782..12559030hypothetical protein
LOC_Os02g21170OsAffx.12142.1.S1_at11/112+12561046..12561513hypothetical protein
LOC_Os02g21180NANA2+12562844..12563373hypothetical protein
LOC_Os02g21190Os.24569.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51424.1.S1_at11/112+12567316..12580766expressed protein
LOC_Os02g21190OsAffx.24360.1.S1_x_at10/112+12567316..12580766expressed protein
LOC_Os02g21190Os.8521.2.S1_x_at5/112+12567316..12580766expressed protein
LOC_Os02g21190Os.51995.1.S1_x_at1/112+12567316..12580766expressed protein
LOC_Os02g21200OsAffx.24361.1.S1_at11/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.22850.1.S1_x_at2/112+12581822..12584665hypothetical protein
LOC_Os02g21200OsAffx.30486.1.S1_at1/112+12581822..12584665hypothetical protein
LOC_Os02g21210Os.24569.1.S2_at11/112+12586431..12590596hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12142.1.S1_at--1064--3933Chr05:17483395..17483557 (25 bp)
CGGCGGCAGAGTACACCAACCGTGG
NONE
OsAffx.12142.1.S1_at--160--3531Chr02:12561248..12561272 (25 bp)
CATGCTGGCGGAGAAATCGGTCGAC
LOC_Os02g21170
OsAffx.12142.1.S1_at--936--491Chr02:12561233..12561257 (25 bp)
ATCGGTCGACGGTGATGACTGCAGC
LOC_Os02g21170
OsAffx.12142.1.S1_at--520--8951Chr02:12561218..12561242 (25 bp)
TGACTGCAGCCGGTGGTGAAGATAA
LOC_Os02g21170
OsAffx.12142.1.S1_at--493--3971Chr02:12561208..12561232 (25 bp)
CGGTGGTGAAGATAATGTTGCCATC
LOC_Os02g21170
OsAffx.12142.1.S1_at--627--6231Chr02:12561180..12561204 (25 bp)
GATGGCGGCGGAATAAGCCAATCGT
LOC_Os02g21170
OsAffx.12142.1.S1_at--750--3051Chr02:12561144..12561168 (25 bp)
AATCGGTCAGCGGTGATGACGGCAA
LOC_Os02g21170
OsAffx.12142.1.S1_at--967--671Chr02:12561129..12561153 (25 bp)
ATGACGGCAACCAGCGGTGAAGATA
LOC_Os02g21170
OsAffx.12142.1.S1_at--892--1712Chr10:11943134..11943182 (25 bp)
ACCAGCGGTGAAGATAATGTCGCCA
NONE
OsAffx.12142.1.S1_at--466--1651Chr02:12561093..12561117 (25 bp)
AGCGACGGCGCGGAGTACACTGTCA
LOC_Os02g21170
OsAffx.12142.1.S1_at--174--4151Chr02:12561085..12561109 (25 bp)
CGCGGAGTACACTGTCACGCCCAGA
LOC_Os02g21170
Target Sequence 
CGGCGGCAGAGTACACCAACCGTGGTGGCGAAGAAACCGGTCGGCGGCGATGACAGCAGTCGGCGGTGAAGGTAATGTCG
CCATCAGCGATGGCGGCGGAATACACCAACCATGCTGGCGGAGAAATCGGTCGACGGTGATGACTGCAGCCGGTGGTGAA
GATAATGTTGCCATCAGCGATGGCGGCGGAATAAGCCAATCGTGGTGGCGGAGAAATCGGTCAGCGGTGATGACGGCAAC
CAGCGGTGAAGATAATGTCGCCATCAGCGACGGCGCGGAGTACACTGTCACGCCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis