Browse Element(s) Details


OsAffx.24366.1.S1_at

Description tigr:9630.m02047
TID=OsAffx.24366.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2135011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21330Os.52060.1.S1_at11/112+12656328..12657274expressed protein
LOC_Os02g21340OsAffx.12146.1.S1_at11/112+12663831..12669649ABC-2 type transporter family protein, expressed
LOC_Os02g21350OsAffx.24366.1.S1_at11/112+12680130..12680576hypothetical protein
LOC_Os02g21359NANA2+12683271..12683920NA
LOC_Os02g21370OsAffx.24367.1.S1_at11/112+12685120..12685344hypothetical protein
LOC_Os02g21379OsAffx.27819.1.S1_x_at1/112+12686872..12688845NA
LOC_Os02g21379Os.31613.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21379OsAffx.28548.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21390NANA2+12693440..12695240hypothetical protein
LOC_Os02g21400Os.46012.3.S1_x_at7/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.2.S1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.27088.1.A1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.3.S1_at4/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400OsAffx.30217.1.S1_x_at2/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.45902.1.A1_x_at1/112+12702399..12709674retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24366.1.S1_at--1140--4232Chr07:4398928..4398947 (20 bp)
CCGTTCCGGCGTGCGCAGTCGATGA
NONE
OsAffx.24366.1.S1_at--392--3391Chr02:12680334..12680358 (25 bp)
CAGCGCGCTCCTGCGTGATGGTGAT
LOC_Os02g21350
OsAffx.24366.1.S1_at--550--4791Chr02:12680328..12680352 (25 bp)
GCTCCTGCGTGATGGTGATGACGAC
LOC_Os02g21350
OsAffx.24366.1.S1_at--366--811Chr02:12680317..12680341 (25 bp)
ATGGTGATGACGACCACAAGGACGA
LOC_Os02g21350
OsAffx.24366.1.S1_at--542--1591Chr02:12680263..12680287 (25 bp)
AGCTCGTCGACATCGGGAGGCTTGC
LOC_Os02g21350
OsAffx.24366.1.S1_at--1011--9351Chr02:12680257..12680281 (25 bp)
TCGACATCGGGAGGCTTGCCACCGG
LOC_Os02g21350
OsAffx.24366.1.S1_at--1147--7511Chr02:12680213..12680237 (25 bp)
GTGGAACGCCTCTTGCAGGACGACA
LOC_Os02g21350
OsAffx.24366.1.S1_at--145--1831Chr02:12680208..12680232 (25 bp)
ACGCCTCTTGCAGGACGACAGCGAG
LOC_Os02g21350
OsAffx.24366.1.S1_at--481--1651Chr02:12680189..12680213 (25 bp)
AGCGAGCGGTTCTTGCGCCGGCTAA
LOC_Os02g21350
OsAffx.24366.1.S1_at--857--4471Chr02:12680173..12680197 (25 bp)
GCCGGCTAAGGGACCGCATAGACAT
LOC_Os02g21350
OsAffx.24366.1.S1_at--981--5811Chr02:12680162..12680186 (25 bp)
GACCGCATAGACATGTACGTACGTA
LOC_Os02g21350
Target Sequence 
CCGTTCCGGCGTGCGCAGTCGATGAGGGGCCACGACGAGGAGGAGGAGGACCTGCGGTGGGCGGCGCTCGAGAAGCTGCC
CACCTACGACCGGATGCGACGCGGCGTCGTCCGCAGCGCGCTCCTGCGTGATGGTGATGACGACCACAAGGACGACGACG
ACGCGGGCACCGGCAAGGCGGTGGAGCTCGTCGACATCGGGAGGCTTGCCACCGGCGACGCCGCCCGCGCCCTCGTGGAA
CGCCTCTTGCAGGACGACAGCGAGCGGTTCTTGCGCCGGCTAAGGGACCGCATAGACATGTACGTACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis