Browse Element(s) Details


OsAffx.24367.1.S1_at

Description tigr:9630.m02049
TID=OsAffx.24367.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2137011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21340OsAffx.12146.1.S1_at11/112+12663831..12669649ABC-2 type transporter family protein, expressed
LOC_Os02g21350OsAffx.24366.1.S1_at11/112+12680130..12680576hypothetical protein
LOC_Os02g21359NANA2+12683271..12683920NA
LOC_Os02g21370OsAffx.24367.1.S1_at11/112+12685120..12685344hypothetical protein
LOC_Os02g21379OsAffx.27819.1.S1_x_at1/112+12686872..12688845NA
LOC_Os02g21379Os.31613.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21379OsAffx.28548.1.S1_at1/112+12686872..12688845NA
LOC_Os02g21390NANA2+12693440..12695240hypothetical protein
LOC_Os02g21400Os.46012.3.S1_x_at7/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.2.S1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.27088.1.A1_x_at6/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.46012.3.S1_at4/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400OsAffx.30217.1.S1_x_at2/112+12702399..12709674retrotransposon protein, putative, unclassified
LOC_Os02g21400Os.45902.1.A1_x_at1/112+12702399..12709674retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24367.1.S1_at--1086--4351Chr02:12685290..12685314 (25 bp)
CCACCATCACGGTATGATGACAGAT
LOC_Os02g21370
OsAffx.24367.1.S1_at--104--10131Chr02:12685278..12685302 (25 bp)
TATGATGACAGATGTGCTTGGCCAC
LOC_Os02g21370
OsAffx.24367.1.S1_at--1067--671Chr02:12685274..12685298 (25 bp)
ATGACAGATGTGCTTGGCCACCGTG
LOC_Os02g21370
OsAffx.24367.1.S1_at--1011--2131Chr02:12685271..12685295 (25 bp)
ACAGATGTGCTTGGCCACCGTGGGT
LOC_Os02g21370
OsAffx.24367.1.S1_at--1089--4931Chr02:12685263..12685287 (25 bp)
GCTTGGCCACCGTGGGTCTTCAAGA
LOC_Os02g21370
OsAffx.24367.1.S1_at--650--10511Chr02:12685245..12685269 (25 bp)
TTCAAGACTGATGGCTCAGGCCATG
LOC_Os02g21370
OsAffx.24367.1.S1_at--300--1971Chr02:12685239..12685263 (25 bp)
ACTGATGGCTCAGGCCATGTTCCAA
LOC_Os02g21370
OsAffx.24367.1.S1_at--302--8491Chr02:12685234..12685258 (25 bp)
TGGCTCAGGCCATGTTCCAACCAAT
LOC_Os02g21370
OsAffx.24367.1.S1_at--806--10671Chr02:12685220..12685244 (25 bp)
TTCCAACCAATCCAACTCCATATAG
LOC_Os02g21370
OsAffx.24367.1.S1_at--408--4391Chr02:12685214..12685238 (25 bp)
CCAATCCAACTCCATATAGCCAAAT
LOC_Os02g21370
OsAffx.24367.1.S1_at--1158--3251Chr02:12685208..12685232 (25 bp)
CAACTCCATATAGCCAAATACCATG
LOC_Os02g21370
Target Sequence 
CCACCATCACGGTATGATGACAGATGTGCTTGGCCACCGTGGGTCTTCAAGACTGATGGCTCAGGCCATGTTCCAACCAA
TCCAACTCCATATAGCCAAATACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis