Browse Element(s) Details


Os.52071.1.S1_at

Description gb:AK064661.1
DB_XREF= gi:32974679
TID=Os.52071.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A08, full insert sequence.
FL= gb:AK064661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0853011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08500OsAffx.28967.1.S1_x_at11/117+4387927..4390224expressed protein
LOC_Os07g08500OsAffx.28967.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08500Os.57401.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08510OsAffx.16158.1.S1_at11/117+4394588..4395985hypothetical protein
LOC_Os07g08520OsAffx.28346.1.S1_at11/117+4398790..4401436B3 DNA binding domain containing protein
LOC_Os07g08530Os.52071.1.S1_at11/117+4402012..4403784B3 DNA binding domain containing protein, expressed
LOC_Os07g08540OsAffx.28347.1.S1_at11/117+4405006..4407956B3 DNA binding domain containing protein
LOC_Os07g08550OsAffx.16158.1.A1_at3/117+4409622..4410065hypothetical protein
LOC_Os07g08560OsAffx.19542.3.S1_x_at5/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08560OsAffx.9949.1.S1_at1/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08570OsAffx.16159.1.S1_at11/117+4423918..4425092F-box domain containing protein
LOC_Os07g08579NANA7+4426161..4426811NA
LOC_Os07g08590OsAffx.28348.1.S1_at11/117+4428485..4428922hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0009942biological_processlongitudinal axis specification
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0040008biological_processregulation of growth
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52071.1.S1_at--869--1771Chr07:4403060..4403084 (25 bp)
ACCGGACAGCTGTGGCGAAATCTCG
LOC_Os07g08530
Os.52071.1.S1_at--1086--3251Chr07:4403350..4403374 (25 bp)
CAACTTTTGGCAAGTTCGACCTGTT
LOC_Os07g08530
Os.52071.1.S1_at--72--2831Chr07:4403379..4403403 (25 bp)
AAGTTGATATTTCTCCTTCTACTCC
LOC_Os07g08530
Os.52071.1.S1_at--821--6051Chr07:4403429..4403453 (25 bp)
GAGATTGATGATACCGCCTCTACTT
LOC_Os07g08530
Os.52071.1.S1_at--880--9531Chr07:4403447..4403471 (25 bp)
TCTACTTCTGTTTCCGTCGACAATG
LOC_Os07g08530
Os.52071.1.S1_at--907--2091Chr07:4403526..4403550 (25 bp)
ACATCTGAGGCCAAGTACACCTGCT
LOC_Os07g08530
Os.52071.1.S1_at--599--7031Chr07:4403540..4403564 (25 bp)
GTACACCTGCTTGTGACTAACTCAA
LOC_Os07g08530
Os.52071.1.S1_at--716--151Chr07:4403571..4403595 (25 bp)
ATTAGTTCTGTCACTTGCGAGTTGT
LOC_Os07g08530
Os.52071.1.S1_at--41--31Chr07:4403607..4403631 (25 bp)
ATTGGGTCCGTCATGAATCAGCTTT
LOC_Os07g08530
Os.52071.1.S1_at--18--4891Chr07:4403627..4403651 (25 bp)
GCTTTGGTCTGCATTTAGTTTGAAG
LOC_Os07g08530
Os.52071.1.S1_at--1157--8611Chr07:4403732..4403756 (25 bp)
TGGTGTACCTGAAATCTGATATCTG
LOC_Os07g08530
Target Sequence 
ACCGGACAGCTGTGGCGAAATCTCGAGATTGTATGGGATGGAAACTCGGAGATGGACATGAGTGCCAACTTTTGGCAAGT
TCGACCTGTTGAGGAAGTTGATATTTCTCCTTCTACTCCTCCTCCGAAGAGGCTCAAGAATTGTGAGATTGATGATACCG
CCTCTACTTCTGTTTCCGTCGACAATGGAGATGAGCAAGTTCCAACGATGAGGCAACGGCTAGAGGCGCTGATTCCTGAT
AACATCTGAGGCCAAGTACACCTGCTTGTGACTAACTCAAGTAAAAATTAGTTCTGTCACTTGCGAGTTGTGACTTTGTG
AGATTGGGTCCGTCATGAATCAGCTTTGGTCTGCATTTAGTTTGAAGGTTATTCCGAATAGTTTCAAAATTCGGGGAACA
AGTTTGCAGTGTTAAATGTCCATTCTAAATCTGACGGAATAGGAAAATGGTGTACCTGAAATCTGATATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis