Browse Element(s) Details


OsAffx.28346.1.S1_at

Description tigr:9635.m00807
TID=OsAffx.28346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0852011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08490OsAffx.28345.1.S1_at11/117+4375792..4376232hypothetical protein
LOC_Os07g08500OsAffx.28967.1.S1_x_at11/117+4387927..4390224expressed protein
LOC_Os07g08500OsAffx.28967.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08500Os.57401.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08510OsAffx.16158.1.S1_at11/117+4394588..4395985hypothetical protein
LOC_Os07g08520OsAffx.28346.1.S1_at11/117+4398790..4401436B3 DNA binding domain containing protein
LOC_Os07g08530Os.52071.1.S1_at11/117+4402012..4403784B3 DNA binding domain containing protein, expressed
LOC_Os07g08540OsAffx.28347.1.S1_at11/117+4405006..4407956B3 DNA binding domain containing protein
LOC_Os07g08550OsAffx.16158.1.A1_at3/117+4409622..4410065hypothetical protein
LOC_Os07g08560OsAffx.19542.3.S1_x_at5/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08560OsAffx.9949.1.S1_at1/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08570OsAffx.16159.1.S1_at11/117+4423918..4425092F-box domain containing protein
LOC_Os07g08579NANA7+4426161..4426811NA

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010158biological_processabaxial cell fate specification
GO:0010227biological_processfloral organ abscission
GO:0045449biological_processregulation of transcription
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28346.1.S1_at--761--7971Chr07:4399442..4399466 (25 bp)
GGATCCCCGACAAGCACGTGGCGGA
LOC_Os07g08520
OsAffx.28346.1.S1_at--13--1071Chr07:4399383..4399407 (25 bp)
AGGGTGACCTACTGCCCATGGCAGG
LOC_Os07g08520
OsAffx.28346.1.S1_at--777--1871Chr07:4399296..4399320 (25 bp)
ACGAGGGTGCGCTTACTGATGAACC
LOC_Os07g08520
OsAffx.28346.1.S1_at--547--6991Chr07:4399237..4399261 (25 bp)
GTACGGCACCGTCAGGGACGTCCAT
LOC_Os07g08520
OsAffx.28346.1.S1_at--81--9251Chr07:4399217..4399241 (25 bp)
TCCATTGCCGGAGCGAGTGGCGCAT
LOC_Os07g08520
OsAffx.28346.1.S1_at--760--991Chr07:4399052..4399076 (25 bp)
AGGTTGACTGGGATCGTGACTCCCC
LOC_Os07g08520
OsAffx.28346.1.S1_at--161--9351Chr07:4399025..4399049 (25 bp)
TCGCTCCCACGATGAACAGACGAGT
LOC_Os07g08520
OsAffx.28346.1.S1_at--687--1391Chr07:4399008..4399032 (25 bp)
AGACGAGTTAATTCTTGGCAAGTCC
LOC_Os07g08520
OsAffx.28346.1.S1_at--195--9571Chr07:4398967..4398991 (25 bp)
TCTTCCACCACAGGGTTCTGATGAG
LOC_Os07g08520
OsAffx.28346.1.S1_at--420--9391Chr07:4398882..4398906 (25 bp)
TCGTTGGCGCTGCAACTTCAGACAA
LOC_Os07g08520
OsAffx.28346.1.S1_at--231--3131Chr07:4398829..4398853 (25 bp)
AATTATCCCGAGTCGTGGCTCCGCG
LOC_Os07g08520
Target Sequence 
GGATCCCCGACAAGCACGTGGCGGACGCCTGGCTCGACGCGTCGTCCGCCCAACCGTTCAGGGTGACCTACTGCCCATGG
CAGGGCACGGCGGAGTTCGTGGTGCGCCGCGAGGAGGTGGAAGGCTCGCCGCCGCTCGCTCCGGGGACGAGGGTGCGCTT
ACTGATGAACCCCGACGACGCGCGCCGCCGCAGCCAGCCACCGGTGTACGGCACCGTCAGGGACGTCCATTGCCGGAGCG
AGTGGCGCATGCTCGAGGTTGACTGGGATCGTGACTCCCCGCTCGCTCCCACGATGAACAGACGAGTTAATTCTTGGCAA
GTCCAACCCGTTCAGCTCGCTCTTCCACCACAGGGTTCTGATGAGGAGGCGGCAGCAGCAACCACATCGACTGCGCACGC
CGGAGATGCCACCACGTCTGCTCCATCGTTGGCGCTGCAACTTCAGACAATGGCATCCTCTTCTTCTTCATCCGCACCAA
TTATCCCGAGTCGTGGCTCCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis