Browse Element(s) Details


OsAffx.16159.1.S1_at

Description tigr:9635.m00812
TID=OsAffx.16159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0857011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08520OsAffx.28346.1.S1_at11/117+4398790..4401436B3 DNA binding domain containing protein
LOC_Os07g08530Os.52071.1.S1_at11/117+4402012..4403784B3 DNA binding domain containing protein, expressed
LOC_Os07g08540OsAffx.28347.1.S1_at11/117+4405006..4407956B3 DNA binding domain containing protein
LOC_Os07g08550OsAffx.16158.1.A1_at3/117+4409622..4410065hypothetical protein
LOC_Os07g08560OsAffx.19542.3.S1_x_at5/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08560OsAffx.9949.1.S1_at1/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08570OsAffx.16159.1.S1_at11/117+4423918..4425092F-box domain containing protein
LOC_Os07g08579NANA7+4426161..4426811NA
LOC_Os07g08590OsAffx.28348.1.S1_at11/117+4428485..4428922hypothetical protein
LOC_Os07g08600OsAffx.28349.1.S1_at11/117+4430893..4432730B3 DNA binding domain containing protein
LOC_Os07g08610Os.51418.1.S1_at5/117+4433036..4435337retrotransposon protein, putative, unclassified
LOC_Os07g08620NANA7+4441434..4442458retrotransposon protein, putative, unclassified
LOC_Os07g08630NANA7+4444177..4447943retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16159.1.S1_at--55--3951Chr07:4424465..4424489 (25 bp)
CGGACTACCTCGATTGGAGCTTCAC
LOC_Os07g08570
OsAffx.16159.1.S1_at--542--8071Chr07:4424450..4424474 (25 bp)
GGAGCTTCACCAATGGAGTCGTGTA
LOC_Os07g08570
OsAffx.16159.1.S1_at--379--1151Chr07:4424434..4424458 (25 bp)
AGTCGTGTACAGAGGCGCGGCTTAC
LOC_Os07g08570
OsAffx.16159.1.S1_at--890--671Chr07:4424316..4424340 (25 bp)
ATGACTCTCCAAGGGCCAACAAAGA
LOC_Os07g08570
OsAffx.16159.1.S1_at--1112--8431Chr07:4424244..4424268 (25 bp)
GGCCATCTCATGTTAGCTCAACTTA
LOC_Os07g08570
OsAffx.16159.1.S1_at--814--1571Chr07:4424230..4424254 (25 bp)
AGCTCAACTTAAGGGCACTCTGTCT
LOC_Os07g08570
OsAffx.16159.1.S1_at--427--3331Chr07:4424215..4424239 (25 bp)
CACTCTGTCTGCAGCGCATTGGAAA
LOC_Os07g08570
OsAffx.16159.1.S1_at--1028--3691Chr07:4424180..4424204 (25 bp)
CTATCGTGGATCTGTGGTTTCTGAC
LOC_Os07g08570
OsAffx.16159.1.S1_at--561--7491Chr07:4424167..4424191 (25 bp)
GTGGTTTCTGACTGATTTTGACAAG
LOC_Os07g08570
OsAffx.16159.1.S1_at--324--1071Chr07:4424074..4424098 (25 bp)
AGTGCACCCTTTGGTTGTGACGGAC
LOC_Os07g08570
OsAffx.16159.1.S1_at--794--6391Chr07:4424008..4424032 (25 bp)
GATCGTGCAGATTTATAACCCGGTA
LOC_Os07g08570
Target Sequence 
CGGACTACCTCGATTGGAGCTTCACCAATGGAGTCGTGTACAGAGGCGCGGCTTACTTCCTCCTGTCCTACTTCAACCGC
GTTGCCGCCTCCTCCCTCATACGGACAGGCTGCATGCCTTCCTTCGACCTTGAAACGGAGCAATGGAGCATGACTCTCCA
AGGGCCAACAAAGACGATTCTTCATGATGCTAATGGCACAGTAAACTACACTGGCCTCGCCGGCCATCTCATGTTAGCTC
AACTTAAGGGCACTCTGTCTGCAGCGCATTGGAAAGATCACGTTTCTATCGTGGATCTGTGGTTTCTGACTGATTTTGAC
AAGGGGACGTGGTCGAAAGAATATAGGATTAATGTTGATTTTGTTTTCTTTGGAACTGGAGTTTATGTGAAAGTGCACCC
TTTGGTTGTGACGGACGAGGGAGAGGTAGTGTTTTGGTTGCAAGCAGGGACAAAAGCGATCGTGCAGATTTATAACCCGG
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis