Browse Element(s) Details


OsAffx.28348.1.S1_at

Description tigr:9635.m00814
TID=OsAffx.28348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0859011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08530Os.52071.1.S1_at11/117+4402012..4403784B3 DNA binding domain containing protein, expressed
LOC_Os07g08540OsAffx.28347.1.S1_at11/117+4405006..4407956B3 DNA binding domain containing protein
LOC_Os07g08550OsAffx.16158.1.A1_at3/117+4409622..4410065hypothetical protein
LOC_Os07g08560OsAffx.19542.3.S1_x_at5/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08560OsAffx.9949.1.S1_at1/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08570OsAffx.16159.1.S1_at11/117+4423918..4425092F-box domain containing protein
LOC_Os07g08579NANA7+4426161..4426811NA
LOC_Os07g08590OsAffx.28348.1.S1_at11/117+4428485..4428922hypothetical protein
LOC_Os07g08600OsAffx.28349.1.S1_at11/117+4430893..4432730B3 DNA binding domain containing protein
LOC_Os07g08610Os.51418.1.S1_at5/117+4433036..4435337retrotransposon protein, putative, unclassified
LOC_Os07g08620NANA7+4441434..4442458retrotransposon protein, putative, unclassified
LOC_Os07g08630NANA7+4444177..4447943retrotransposon protein, putative, unclassified
LOC_Os07g08640Os.56343.1.S1_at3/117+4451901..4452899retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28348.1.S1_at--302--4851Chr07:4428832..4428856 (25 bp)
GCTACTGCGTCCCTATGCAACCGGG
LOC_Os07g08590
OsAffx.28348.1.S1_at--479--10551Chr07:4428738..4428762 (25 bp)
TTCATCTCCGGCTGCCGGTGCGACA
LOC_Os07g08590
OsAffx.28348.1.S1_at--1125--7291Chr07:4428721..4428745 (25 bp)
GTGCGACACACCATCATTGTCGTCA
LOC_Os07g08590
OsAffx.28348.1.S1_at--683--2191Chr07:4428716..4428740 (25 bp)
ACACACCATCATTGTCGTCAGGCCG
LOC_Os07g08590
OsAffx.28348.1.S1_at--718--9611Chr07:4428617..4428641 (25 bp)
TCATCGTCTCTTCCTCGGTCGTTGC
LOC_Os07g08590
OsAffx.28348.1.S1_at--1111--9571Chr07:4428609..4428633 (25 bp)
TCTTCCTCGGTCGTTGCCATGCGGA
LOC_Os07g08590
OsAffx.28348.1.S1_at--66--9271Chr07:4428606..4428630 (25 bp)
TCCTCGGTCGTTGCCATGCGGATGC
LOC_Os07g08590
OsAffx.28348.1.S1_at--79--7811Chr07:4428601..4428625 (25 bp)
GGTCGTTGCCATGCGGATGCGGGTG
LOC_Os07g08590
OsAffx.28348.1.S1_at--672--5051Chr07:4428577..4428601 (25 bp)
GCAGCAGGGCCTCGGTCGGGTGACA
LOC_Os07g08590
OsAffx.28348.1.S1_at--877--9411Chr07:4428566..4428590 (25 bp)
TCGGTCGGGTGACAGGGCCCCGGAG
LOC_Os07g08590
OsAffx.28348.1.S1_at--948--9011Chr07:4428533..4428557 (25 bp)
TGCAGAGGTTGTTTTACGCCCGTTT
LOC_Os07g08590
Target Sequence 
GCTACTGCGTCCCTATGCAACCGGGCCGCCTGCTTCTCCTCTATGCCCCCACGCAGCCGGGCTGTCGACGCCGCCTACTG
CTACTCCGCGCCGGTTCATCTCCGGCTGCCGGTGCGACACACCATCATTGTCGTCAGGCCGCCTCATCCATCCACAGTCC
CCACGCCTGCTCGTCGCTGCTCCGCCTCTTCATCGTCGTCCCACTGCATCACGCCTCATCGTCTCTTCCTCGGTCGTTGC
CATGCGGATGCGGGTGCAGCAGGGCCTCGGTCGGGTGACAGGGCCCCGGAGGTGTCGGGTGCAGAGGTTGTTTTACGCCC
GTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis