Browse Element(s) Details


OsAffx.28349.1.S1_at

Description tigr:9635.m00815
TID=OsAffx.28349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=B3 DNA binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0860011/11B3 DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08540OsAffx.28347.1.S1_at11/117+4405006..4407956B3 DNA binding domain containing protein
LOC_Os07g08550OsAffx.16158.1.A1_at3/117+4409622..4410065hypothetical protein
LOC_Os07g08560OsAffx.19542.3.S1_x_at5/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08560OsAffx.9949.1.S1_at1/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08570OsAffx.16159.1.S1_at11/117+4423918..4425092F-box domain containing protein
LOC_Os07g08579NANA7+4426161..4426811NA
LOC_Os07g08590OsAffx.28348.1.S1_at11/117+4428485..4428922hypothetical protein
LOC_Os07g08600OsAffx.28349.1.S1_at11/117+4430893..4432730B3 DNA binding domain containing protein
LOC_Os07g08610Os.51418.1.S1_at5/117+4433036..4435337retrotransposon protein, putative, unclassified
LOC_Os07g08620NANA7+4441434..4442458retrotransposon protein, putative, unclassified
LOC_Os07g08630NANA7+4444177..4447943retrotransposon protein, putative, unclassified
LOC_Os07g08640Os.56343.1.S1_at3/117+4451901..4452899retrotransposon protein, putative, unclassified
LOC_Os07g08650Os.54836.1.S1_at11/117+4455911..4457525expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009733biological_processresponse to auxin stimulus
GO:0009850biological_processauxin metabolism
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010158biological_processabaxial cell fate specification
GO:0010227biological_processfloral organ abscission
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0051301biological_processcell division
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28349.1.S1_at--151--1351Chr07:4432150..4432174 (25 bp)
AGAGTCTCGTTTCATTCGTCAAGCC
LOC_Os07g08600
OsAffx.28349.1.S1_at--995--9671Chr07:4432177..4432201 (25 bp)
TCACCTATACCGATGTCACCAAGAA
LOC_Os07g08600
OsAffx.28349.1.S1_at--656--10751Chr07:4432257..4432281 (25 bp)
TTGAACGATGATGTGCCTCTCCGAA
LOC_Os07g08600
OsAffx.28349.1.S1_at--743--8531Chr07:4432305..4432329 (25 bp)
TGGGCGTTTAACTACACCTGGAAAG
LOC_Os07g08600
OsAffx.28349.1.S1_at--1030--1791Chr07:4432335..4432359 (25 bp)
ACCCGCATGTTTCGCAATGGTTGGA
LOC_Os07g08600
OsAffx.28349.1.S1_at--213--8031Chr07:4432361..4432385 (25 bp)
GGAGTTTTCTAATGCCAACGGCCTC
LOC_Os07g08600
OsAffx.28349.1.S1_at--1--5611Chr07:4432395..4432419 (25 bp)
GACAATGCCGTGTTCATGCGTCGCG
LOC_Os07g08600
OsAffx.28349.1.S1_at--132--4531Chr07:4432516..4432540 (25 bp)
GCCGCGAGCCGTTTGAGGTCAGCTA
LOC_Os07g08600
OsAffx.28349.1.S1_at--129--1031Chr07:4432531..4432555 (25 bp)
AGGTCAGCTATTGCTTGCGCCAGGA
LOC_Os07g08600
OsAffx.28349.1.S1_at--179--8111Chr07:4432559..4432583 (25 bp)
GGACGAGTTCGTTGTACCACGTGAC
LOC_Os07g08600
OsAffx.28349.1.S1_at--129--6851Chr07:4432610..4432634 (25 bp)
GTTTGCTCCAGGCATGGCTGTGAAC
LOC_Os07g08600
Target Sequence 
AGAGTCTCGTTTCATTCGTCAAGCCTCTCACCTATACCGATGTCACCAAGAATCGGTTCATGGTGCCCAAGGACGATGCC
GCTGCGGGAGTTCTTCCTCACATACAGTTGAACGATGATGTGCCTCTCCGAATCAAGGACTTGAGCGGAAAGGAGTGGGC
GTTTAACTACACCTGGAAAGCTCACACCCGCATGTTTCGCAATGGTTGGATGGAGTTTTCTAATGCCAACGGCCTCGTCA
CTGGCGACAATGCCGTGTTCATGCGTCGCGGCAACGGCGAGATGTTCATGGCGGTGCGGCGCACGCGCAACAGGCCGGCG
CCCTTCTCAGTGGAGGAGGTCATCGAGGCCGTGTGGCGGGCAGCGCGCCGCGAGCCGTTTGAGGTCAGCTATTGCTTGCG
CCAGGATGGGGACGAGTTCGTTGTACCACGTGACATCGTCGATGATGGCTTACGCGCCAGGTTTGCTCCAGGCATGGCTG
TGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis