Browse Element(s) Details


OsAffx.28345.1.S1_at

Description tigr:9635.m00804
TID=OsAffx.28345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0849011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08450OsAffx.28344.1.S1_at11/117+4347336..4352164expressed protein
LOC_Os07g08460Os.8622.1.S1_at11/117+4353511..4354872AUX/IAA family protein, expressed
LOC_Os07g08470OsAffx.16156.1.S1_at11/117+4359390..4359617hypothetical protein
LOC_Os07g08480OsAffx.16157.1.S1_at11/117+4366159..4367350hypothetical protein
LOC_Os07g08490OsAffx.28345.1.S1_at11/117+4375792..4376232hypothetical protein
LOC_Os07g08500OsAffx.28967.1.S1_x_at11/117+4387927..4390224expressed protein
LOC_Os07g08500OsAffx.28967.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08500Os.57401.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08510OsAffx.16158.1.S1_at11/117+4394588..4395985hypothetical protein
LOC_Os07g08520OsAffx.28346.1.S1_at11/117+4398790..4401436B3 DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28345.1.S1_at--853--7351Chr07:4375874..4375898 (25 bp)
GTGAACCGCGAGTCGTGGCAGTTGA
LOC_Os07g08490
OsAffx.28345.1.S1_at--303--5031Chr07:4375891..4375915 (25 bp)
GCAGTTGAGGAGGATGCCGCCCAGC
LOC_Os07g08490
OsAffx.28345.1.S1_at--164--1952Chr07:4376033..4376057 (25 bp)
ACGGCCGCGAGCACGTCGTCAGGCA
LOC_Os07g08490
OsAffx.28345.1.S1_at--1136--7191Chr07:4376091..4376115 (25 bp)
GTCGTCGCTTGACTATCGCGGCAAA
LOC_Os07g08490
OsAffx.28345.1.S1_at--156--9331Chr07:4376095..4376119 (25 bp)
TCGCTTGACTATCGCGGCAAATTGG
LOC_Os07g08490
OsAffx.28345.1.S1_at--570--7611Chr07:4376119..4376143 (25 bp)
GGGAATTCTTTTTCGCCAATGCAGT
LOC_Os07g08490
OsAffx.28345.1.S1_at--557--91Chr07:4376123..4376147 (25 bp)
ATTCTTTTTCGCCAATGCAGTTGAT
LOC_Os07g08490
OsAffx.28345.1.S1_at--49--4391Chr07:4376133..4376157 (25 bp)
GCCAATGCAGTTGATTTGGGCTCAA
LOC_Os07g08490
OsAffx.28345.1.S1_at--1028--10771Chr07:4376143..4376167 (25 bp)
TTGATTTGGGCTCAACCGCTCAAGC
LOC_Os07g08490
OsAffx.28345.1.S1_at--553--9711Chr07:4376154..4376178 (25 bp)
TCAACCGCTCAAGCCGCGGGAGGTG
LOC_Os07g08490
OsAffx.28345.1.S1_at--59--8611Chr07:4376177..4376201 (25 bp)
TGGTCGTGGCTCGTTGCCAAGTAGT
LOC_Os07g08490
Target Sequence 
GTGAACCGCGAGTCGTGGCAGTTGAGGAGGATGCCGCCCAGCGAGAGCGGGAGGAGGTCCGCGCGCAGGAGGCGGCGGGA
GTCGACGACGAGCGCGGCGCCACTCCTTGCAGGCGCAGCGGGACGCTGCGCGAGGCCACGCGGCGGGAGGCGGCGGAGGA
CGGCCGCGAGCACGTCGTCAGGCAGCGACGACGCCACATCCATCGCCTCAGCACGTCGTCGTCGCTTGACTATCGCGGCA
AATTGGGGAATTCTTTTTCGCCAATGCAGTTGATTTGGGCTCAACCGCTCAAGCCGCGGGAGGTGGTCGTGGCTCGTTGC
CAAGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis