Browse Element(s) Details


OsAffx.16156.1.S1_at

Description tigr:9635.m00802
TID=OsAffx.16156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0847011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08440Os.8344.1.S1_at11/117+4336814..4340518Lipoamide dehydrogenase, putative, expressed
LOC_Os07g08450OsAffx.28344.1.S1_at11/117+4347336..4352164expressed protein
LOC_Os07g08460Os.8622.1.S1_at11/117+4353511..4354872AUX/IAA family protein, expressed
LOC_Os07g08470OsAffx.16156.1.S1_at11/117+4359390..4359617hypothetical protein
LOC_Os07g08480OsAffx.16157.1.S1_at11/117+4366159..4367350hypothetical protein
LOC_Os07g08490OsAffx.28345.1.S1_at11/117+4375792..4376232hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16156.1.S1_at--170--6111Chr07:4359429..4359453 (25 bp)
GAGTCCAATGATGTTATCCCTTCCA
LOC_Os07g08470
OsAffx.16156.1.S1_at--1043--1131Chr07:4359430..4359454 (25 bp)
AGTCCAATGATGTTATCCCTTCCAC
LOC_Os07g08470
OsAffx.16156.1.S1_at--620--7271Chr07:4359431..4359455 (25 bp)
GTCCAATGATGTTATCCCTTCCACC
LOC_Os07g08470
OsAffx.16156.1.S1_at--301--9211Chr07:4359432..4359456 (25 bp)
TCCAATGATGTTATCCCTTCCACCA
LOC_Os07g08470
OsAffx.16156.1.S1_at--220--4191Chr07:4359433..4359457 (25 bp)
CCAATGATGTTATCCCTTCCACCAT
LOC_Os07g08470
OsAffx.16156.1.S1_at--833--3191Chr07:4359434..4359458 (25 bp)
CAATGATGTTATCCCTTCCACCATC
LOC_Os07g08470
OsAffx.16156.1.S1_at--683--1711Chr07:4359453..4359477 (25 bp)
ACCATCGCCACTCGCAGAGAAGACG
LOC_Os07g08470
OsAffx.16156.1.S1_at--1072--2851Chr07:4359504..4359528 (25 bp)
AAGTGCACCTGTGGATGCGAAGTAG
LOC_Os07g08470
OsAffx.16156.1.S1_at--660--9031Chr07:4359507..4359531 (25 bp)
TGCACCTGTGGATGCGAAGTAGGCC
LOC_Os07g08470
OsAffx.16156.1.S1_at--232--5091Chr07:4359508..4359532 (25 bp)
GCACCTGTGGATGCGAAGTAGGCCA
LOC_Os07g08470
OsAffx.16156.1.S1_at--532--8471Chr07:4359550..4359574 (25 bp)
TGGCTGAAGAGGAGGTGACAACGTT
LOC_Os07g08470
Target Sequence
GAGTCCAATGATGTTATCCCTTCCACCATCGCCACTCGCAGAGAAGACGCGGAGGAGAGGCTGGAGGTGGAAGAGAAGTG
CACCTGTGGATGCGAAGTAGGCCAGGGGAGCAGCGCTGCTGTGGCTGAAGAGGAGGTGACAACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis