Browse Element(s) Details


Os.8622.1.S1_at

Description gb:AK103483.1
DB_XREF= gi:32988692
TID=Os.8622.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130J12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130J12, full insert sequence.
FL= gb:AK103483.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0846011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08430Os.32503.1.S1_x_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.32503.1.S1_at11/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430OsAffx.10400.1.S1_x_at6/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08430Os.18743.2.S1_x_at2/117+4328716..4331942Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os07g08440Os.8344.1.S1_at11/117+4336814..4340518Lipoamide dehydrogenase, putative, expressed
LOC_Os07g08450OsAffx.28344.1.S1_at11/117+4347336..4352164expressed protein
LOC_Os07g08460Os.8622.1.S1_at11/117+4353511..4354872AUX/IAA family protein, expressed
LOC_Os07g08470OsAffx.16156.1.S1_at11/117+4359390..4359617hypothetical protein
LOC_Os07g08480OsAffx.16157.1.S1_at11/117+4366159..4367350hypothetical protein
LOC_Os07g08490OsAffx.28345.1.S1_at11/117+4375792..4376232hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009630biological_processgravitropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0040008biological_processregulation of growth
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8622.1.S1_at--1057--2611Chr07:4354166..4354190 (25 bp)
AACCGCCTCTGACGGATGCAGCGAT
LOC_Os07g08460
Os.8622.1.S1_at--834--3431Chr07:4354138..4354162 (25 bp)
CAGTTCGCCATTGCCTACGAGGACA
LOC_Os07g08460
Os.8622.1.S1_at--1159--1911Chr07:4354110..4354134 (25 bp)
ACGGTGACCTCATGCTTGTTGGAGA
LOC_Os07g08460
Os.8622.1.S1_at--146--6031Chr07:4353977..4354113 (25 bp)
GAGATGTGCCCTGGGAAATGTTCAT
LOC_Os07g08460
Os.8622.1.S1_at--1144--371Chr07:4353875..4353899 (25 bp)
ATCACAGGCTAGGACACACCACATG
LOC_Os07g08460
Os.8622.1.S1_at--761--1451Chr07:4353774..4353798 (25 bp)
AGAAGAGCCCTGATGGCTTGTGCTC
LOC_Os07g08460
Os.8622.1.S1_at--828--3611Chr07:4353758..4353782 (25 bp)
CTTGTGCTCTTCGTTGCTGTACAGA
LOC_Os07g08460
Os.8622.1.S1_at--945--911Chr07:4353725..4353749 (25 bp)
AGGCACTGCCTTGTTTCAGTGTTTC
LOC_Os07g08460
Os.8622.1.S1_at--496--9751Chr07:4353655..4353679 (25 bp)
TAATTAGGCTCATTTCTTTTTTCAG
LOC_Os07g08460
Os.8622.1.S1_at--375--191Chr07:4353558..4353582 (25 bp)
ATTTCTCCACACCAAAGATTCCTTG
LOC_Os07g08460
Os.8622.1.S1_at--1077--6571Chr07:4353542..4353566 (25 bp)
GATTCCTTGTTTCTCTGTGTTCATA
LOC_Os07g08460
Target Sequence 
AACCGCCTCTGACGGATGCAGCGATGGCCAGTTCGCCATTGCCTACGAGGACAAGGACGGTGACCTCATGCTTGTTGGAG
ATGTGCCCTGGGAAATGTTCATCTCTTCCTGCAAGAAGTTGAGGATCATGAAGGGCTCTGAAGCCAGGTGATGGTCTGAT
GGATGATCAAAGGAGACAAATCACAGGCTAGGACACACCACATGAGAAGATGGATGATGAATCAGAGATCATGAATCACA
TGGCATGAGATGAATGGGATCAAGAAGGGAGCAGAGGACTAGAAGAGCCCTGATGGCTTGTGCTCTTCGTTGCTGTACAG
AGAGAGTTTAGGCACTGCCTTGTTTCAGTGTTTCTGAATCCAAGAGGGACAAGATGTATGAACTGTGTATATAGTCTTTT
AATTAGGCTCATTTCTTTTTTCAGTTTGAGTTTTGTACTGTATGAGCGAAGGCTGGAAAATATGAAAAAAGGGAGAAATT
TGACTTAAGCTTGGTCATTTCTCCACACCAAAGATTCCTTGTTTCTCTGTGTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis