Browse Element(s) Details


OsAffx.16157.1.S1_at

Description tigr:9635.m00803
TID=OsAffx.16157.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0848011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08450OsAffx.28344.1.S1_at11/117+4347336..4352164expressed protein
LOC_Os07g08460Os.8622.1.S1_at11/117+4353511..4354872AUX/IAA family protein, expressed
LOC_Os07g08470OsAffx.16156.1.S1_at11/117+4359390..4359617hypothetical protein
LOC_Os07g08480OsAffx.16157.1.S1_at11/117+4366159..4367350hypothetical protein
LOC_Os07g08490OsAffx.28345.1.S1_at11/117+4375792..4376232hypothetical protein
LOC_Os07g08500OsAffx.28967.1.S1_x_at11/117+4387927..4390224expressed protein
LOC_Os07g08500OsAffx.28967.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08500Os.57401.1.S1_at11/117+4387927..4390224expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16157.1.S1_at--1032--10291Chr07:4366212..4366236 (25 bp)
TTTCCCTTTTTTCCAATGTGCGTAT
LOC_Os07g08480
OsAffx.16157.1.S1_at--1047--9451Chr07:4366662..4366686 (25 bp)
TCTGGCGTTGGCTCACTGTCAACTG
LOC_Os07g08480
OsAffx.16157.1.S1_at--962--1951Chr07:4366676..4366700 (25 bp)
ACTGTCAACTGTCACGCCGAGGTGC
LOC_Os07g08480
OsAffx.16157.1.S1_at--1113--4231Chr07:4366700..4366724 (25 bp)
CCGTGGTGGAAGTCGACGCTTTGCT
LOC_Os07g08480
OsAffx.16157.1.S1_at--771--7871Chr07:4366738..4366762 (25 bp)
GGTTTATCGTCCAGGGTCACTGTGC
LOC_Os07g08480
OsAffx.16157.1.S1_at--612--891Chr07:4366766..4366790 (25 bp)
AGGCGTAGCCATAGATCTCCTCCAA
LOC_Os07g08480
OsAffx.16157.1.S1_at--467--5091Chr07:4367135..4367155 (21 bp)
GCACCTCATCTCGATGTTCTTCAAT
LOC_Os07g08480
OsAffx.16157.1.S1_at--71--4851Chr07:4367168..4367192 (25 bp)
GCTACAGTCAGCCTTTCAGGCATGA
LOC_Os07g08480
OsAffx.16157.1.S1_at--389--931Chr07:4367185..4367209 (25 bp)
AGGCATGATGCGGAACACCGTCAAG
LOC_Os07g08480
OsAffx.16157.1.S1_at--700--4051Chr07:4367236..4367260 (25 bp)
CGATGCTGAGGACGCTCTTGTGCCA
LOC_Os07g08480
OsAffx.16157.1.S1_at--773--1471Chr07:4367268..4367292 (25 bp)
AGAATGAAGCTCAAGCCCACGGCGC
LOC_Os07g08480
Target Sequence 
TTTCCCTTTTTTCCAATGTGCGTATGACATGTGGGGCCCGCTTGCCCGCTCTGGCGTTGGCTCACTGTCAACTGTCACGC
CGAGGTGCCGTGGTGGAAGTCGACGCTTTGCTGGGGGTGACAACTGGTTTATCGTCCAGGGTCACTGTGCCCGAGGCGTA
GCCATAGATCTCCTCCAAGTGCACCTCATCTCGATGTTCTTCAATACACATGTGCGCGCTACAGTCAGCCTTTCAGGCAT
GATGCGGAACACCGTCAAGGTAGAGATGGACGCAAAACATCAAGGCGATGCTGAGGACGCTCTTGTGCCACTTGAAAAGA
ATGAAGCTCAAGCCCACGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis