Browse Element(s) Details


Os.57401.1.S1_at

Description gb:AK111461.1
DB_XREF= gi:32996670
TID=Os.57401.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-C12, full insert sequence.
FL= gb:AK111461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0850011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08480OsAffx.16157.1.S1_at11/117+4366159..4367350hypothetical protein
LOC_Os07g08490OsAffx.28345.1.S1_at11/117+4375792..4376232hypothetical protein
LOC_Os07g08500OsAffx.28967.1.S1_x_at11/117+4387927..4390224expressed protein
LOC_Os07g08500OsAffx.28967.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08500Os.57401.1.S1_at11/117+4387927..4390224expressed protein
LOC_Os07g08510OsAffx.16158.1.S1_at11/117+4394588..4395985hypothetical protein
LOC_Os07g08520OsAffx.28346.1.S1_at11/117+4398790..4401436B3 DNA binding domain containing protein
LOC_Os07g08530Os.52071.1.S1_at11/117+4402012..4403784B3 DNA binding domain containing protein, expressed
LOC_Os07g08540OsAffx.28347.1.S1_at11/117+4405006..4407956B3 DNA binding domain containing protein
LOC_Os07g08550OsAffx.16158.1.A1_at3/117+4409622..4410065hypothetical protein
LOC_Os07g08560OsAffx.19542.3.S1_x_at5/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g08560OsAffx.9949.1.S1_at1/117+4411953..4418769retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0009910biological_processnegative regulation of flower development
GO:0003677molecular_functionDNA binding
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57401.1.S1_at--1033--5131Chr07:4389944..4389968 (25 bp)
GCAAAGCGTCAGTAGGTGCTCAGAG
LOC_Os07g08500
Os.57401.1.S1_at--691--1191Chr07:4389954..4389978 (25 bp)
AGTAGGTGCTCAGAGTCCTTCTCCG
LOC_Os07g08500
Os.57401.1.S1_at--647--4311Chr07:4389970..4389994 (25 bp)
CCTTCTCCGATGATCGAGGGAGATG
LOC_Os07g08500
Os.57401.1.S1_at--897--8031Chr07:4389988..4390012 (25 bp)
GGAGATGATTCTCCCCTGAAAAGAA
LOC_Os07g08500
Os.57401.1.S1_at--715--7011Chr07:4390035..4390059 (25 bp)
GTACTTATTTTAATTGTGCGCTGCA
LOC_Os07g08500
Os.57401.1.S1_at--506--7291Chr07:4390050..4390074 (25 bp)
GTGCGCTGCATTTAACTTTGTGTGT
LOC_Os07g08500
Os.57401.1.S1_at--789--7131Chr07:4390089..4390113 (25 bp)
GTCATATAGATCCTTGGTAACCTTG
LOC_Os07g08500
Os.57401.1.S1_at--773--3571Chr07:4390101..4390125 (25 bp)
CTTGGTAACCTTGTACATTTTAGAG
LOC_Os07g08500
Os.57401.1.S1_at--599--7411Chr07:4390129..4390153 (25 bp)
GTGTTGTGATTGATACCCTTGATTC
LOC_Os07g08500
Os.57401.1.S1_at--599--7691Chr07:4390156..4390180 (25 bp)
GGGTATGATTTAGTGGCTGTATTCA
LOC_Os07g08500
Os.57401.1.S1_at--639--7531Chr07:4390168..4390192 (25 bp)
GTGGCTGTATTCAGATATTTAAACA
LOC_Os07g08500
Target Sequence 
GCAAAGCGTCAGTAGGTGCTCAGAGTCCTTCTCCGATGATCGAGGGAGATGATTCTCCCCTGAAAAGAAACAAACAACCA
AACATATGAGTGTACTTATTTTAATTGTGCGCTGCATTTAACTTTGTGTGTTGATTAAGATTTTAGTCATATAGATCCTT
GGTAACCTTGTACATTTTAGAGGTTGTGTTGTGATTGATACCCTTGATTCAGGGGTATGATTTAGTGGCTGTATTCAGAT
ATTTAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis