Browse Element(s) Details


Os.52088.1.S1_at

Description gb:AK064689.1
DB_XREF= gi:32974707
TID=Os.52088.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-E06, full insert sequence.
FL= gb:AK064689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1270011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12670Os.11356.1.A1_at10/112+6616308..6623367protein kinase family protein, putative, expressed
LOC_Os02g12680Os.18933.1.S1_at5/112+6628383..6630103Cytochrome P450 74A3, putative, expressed
LOC_Os02g12690Os.7087.1.S1_at11/112+6637973..6639831Cytochrome P450 74A4, putative, expressed
LOC_Os02g12700Os.52088.1.S1_at11/112+6644227..6645926expressed protein
LOC_Os02g12710NANA2+6648410..6649777hypothetical protein
LOC_Os02g12720OsAffx.12009.1.S1_at11/112+6651470..6652921expressed protein
LOC_Os02g12730Os.14358.4.S1_x_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12730Os.14358.1.S1_at11/112+6655868..6660984Beta-galactosidase precursor, putative, expressed
LOC_Os02g12740Os.24285.1.A1_at10/112+6668824..6672908GPI-anchor transamidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52088.1.S1_at--993--7171Chr02:6644697..6644721 (25 bp)
GTCTGATGGGCCAGGTGTTCGTCAT
LOC_Os02g12700
Os.52088.1.S1_at--1142--1671Chr02:6644623..6644647 (25 bp)
AGCCTGATGAAGGACACCCGCATTG
LOC_Os02g12700
Os.52088.1.S1_at--963--8291Chr02:6644481..6644505 (25 bp)
GGCTAATAGCCCATGAGCTCAAGCA
LOC_Os02g12700
Os.52088.1.S1_at--599--691Chr02:6644469..6644493 (25 bp)
ATGAGCTCAAGCATGGATCATCTGA
LOC_Os02g12700
Os.52088.1.S1_at--487--10031Chr02:6644365..6644389 (25 bp)
TATAGGGCAGTCTTTTAGGGTTAAT
LOC_Os02g12700
Os.52088.1.S1_at--39--10051Chr02:6644337..6644361 (25 bp)
TAGATGCAACGTACTGCTTGGTTTC
LOC_Os02g12700
Os.52088.1.S1_at--474--9071Chr02:6644323..6644347 (25 bp)
TGCTTGGTTTCCCTTTCAATATCAC
LOC_Os02g12700
Os.52088.1.S1_at--330--10631Chr02:6644289..6644313 (25 bp)
TTCGTATTATTGTCATGTTCATTCA
LOC_Os02g12700
Os.52088.1.S1_at--1006--8571Chr02:6644264..6644288 (25 bp)
TGGTCCACAATTGTACTTGGGAGTT
LOC_Os02g12700
Os.52088.1.S1_at--223--7651Chr02:6644246..6644270 (25 bp)
GGGAGTTACATTCACCACGATTCAA
LOC_Os02g12700
Os.52088.1.S1_at--945--4351Chr02:6644232..6644256 (25 bp)
CCACGATTCAATCACGCTAATTAGA
LOC_Os02g12700
Target Sequence 
GTCTGATGGGCCAGGTGTTCGTCATCGACGACGACGAGGTCACCGGGAAGCTGTCGGCGGCGAGGTCGAAGCGGAGCCTG
ATGAAGGACACCCGCATTGTGAAGGAGTTGAACGGCGGCCGTGGCGGCGGCGGCGGCGCCATGGATGAGAAGAAGGAGAA
GAAGCAGGAGATGATCAAGAACTCGCTGGAGAAGAAGAGGACAGTTAAGAAGGAGCGGCTAATAGCCCATGAGCTCAAGC
ATGGATCATCTGATCTATGAAACAAGGAAAGGAATTATGGATAATTTAATTAGGGTTGCATTTCATATATATGATTTATC
TTTTTTAGGGTTTATAGGGCAGTCTTTTAGGGTTAATTACTAGATGCAACGTACTGCTTGGTTTCCCTTTCAATATCACT
ATGTTATTTTCGTATTATTGTCATGTTCATTCATGGTCCACAATTGTACTTGGGAGTTACATTCACCACGATTCAATCAC
GCTAATTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis