Browse Element(s) Details


Os.5210.1.S1_at

Description gb:AK072183.1
DB_XREF= gi:32982206
TID=Os.5210.1
CNT=54
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.5210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151H08, full insert sequence.
FL= gb:AK072183.1 gb:AK098863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3937011/11sodium/dicarboxylate cotransporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39340OsAffx.29598.1.S1_at11/118+24728294..24731473expressed protein
LOC_Os08g39350Os.9696.1.S1_at11/118+24733098..24739315Glycerophosphoryl diester phosphodiesterase family protein, expressed
LOC_Os08g39360OsAffx.6083.1.S1_at11/118+24745902..24747010hypothetical protein
LOC_Os08g39360OsAffx.24232.2.S1_s_at1/118+24745902..24747010hypothetical protein
LOC_Os08g39370Os.5210.1.S1_at11/118+24750412..24753503sodium/dicarboxylate cotransporter, putative, expressed
LOC_Os08g39380Os.21874.1.S1_at11/118+24754930..24759033beta-2-xylosyltransferase, putative, expressed
LOC_Os08g39390OsAffx.17417.2.S1_x_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.2.S1_at11/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.17417.1.S1_x_at3/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed
LOC_Os08g39390OsAffx.29835.1.S1_x_at1/118+24772689..24775727Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006814biological_processsodium ion transport
GO:0006835biological_processdicarboxylic acid transport
GO:0015743biological_processmalate transport
GO:0051453biological_processregulation of cellular pH
GO:0005773cellular_componentvacuole
GO:0015140molecular_functionmalate transporter activity
GO:0017153molecular_functionsodium:dicarboxylate symporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5210.1.S1_at--1013--3991Chr08:24752792..24752816 (25 bp)
CGTCAAACGTTGTCGGCTTCAGCAC
LOC_Os08g39370
Os.5210.1.S1_at--480--3331Chr08:24752814..24752838 (25 bp)
CACCGGCTACATTACCATCAAGGAT
LOC_Os08g39370
Os.5210.1.S1_at--506--7671Chr08:24752851..24752875 (25 bp)
GGGTTGCCCCTGAAAATTGTTGCCA
LOC_Os08g39370
Os.5210.1.S1_at--839--2231Chr08:24752864..24752888 (25 bp)
AAATTGTTGCCATTGCAGCTCTGAC
LOC_Os08g39370
Os.5210.1.S1_at--611--5651Chr08:24752886..24752909 (24 bp)
GACAGTCTTACTGCCAACATTAGGA
LOC_Os08g39370
Os.5210.1.S1_at--155--1211Chr08:24753084..24753108 (25 bp)
AGTTTCTGTTTCTGTATCTCATGCC
LOC_Os08g39370
Os.5210.1.S1_at--15--3551Chr08:24753156..24753180 (25 bp)
CATAGGGATTTCTCAGCCGTTCTGT
LOC_Os08g39370
Os.5210.1.S1_at--104--151Chr08:24753181..24753205 (25 bp)
ATTACTGTATCTGAGACGTGCCCCG
LOC_Os08g39370
Os.5210.1.S1_at--386--7291Chr08:24753198..24753222 (25 bp)
GTGCCCCGGGAGATCAGATTTCTTG
LOC_Os08g39370
Os.5210.1.S1_at--868--10131Chr08:24753316..24753340 (25 bp)
TATGCAGGTCTTATCCTCTAGAGGT
LOC_Os08g39370
Os.5210.1.S1_at--162--1051Chr08:24753337..24753361 (25 bp)
AGGTGCTATAGCTTATTGTTCTTCA
LOC_Os08g39370
Target Sequence 
CGTCAAACGTTGTCGGCTTCAGCACCGGCTACATTACCATCAAGGATCTGGTGGCCACTGGGTTGCCCCTGAAAATTGTT
GCCATTGCAGCTCTGACAGTCTTACTGCCAACATTAGGATCAACGATTTTTGGCATGGACATCAAGTCATAGGAACATAA
ATATGAAGTTTTTGAGAATGTACAGTAGTTTCTGTTTCTGTATCTCATGCCTGAACTATTGTTGAGGGGTCAGATGGCAT
GGTTTGTATAAGAGTAACCATAGGGATTTCTCAGCCGTTCTGTATTACTGTATCTGAGACGTGCCCCGGGAGATCAGATT
TCTTGTCAAGACAGAAGCAAGGAAGACAAGCAGACAATAGAAGAATGATCAAAATGAAACGTATTCAAACAATCCATATC
CTTCAGATGAGCGTACAATATGCAGGTCTTATCCTCTAGAGGTGCTATAGCTTATTGTTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis